CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0668100

Gene name
Homology with Arabidopsis Similar to At3g57500: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.49

%ile 64.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.93 Os01g0668100 AK105603.1 - Beta-Ig-H3/fasciclin domain containing protein 1e-1 At3g57500 unknown protein O.I. H.G. S.X.
0.67 87.2 0.93 Os02g0285300 AK058613.1 - DREPP plasma membrane polypeptide family protein 2e+0 At5g51720 unknown protein O.I. H.G. S.X.
0.55 73.7 0.93 Os09g0469600 AK058776.1 - Hypothetical protein 2e+0 At2g17300 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os07g0590800 AK062359.1 - Hypothetical protein 1e+0 At5g61490 - O.I. H.G. S.X.
0.40 51.1 0.95 Os02g0653000 AK062922.1 - Conserved hypothetical protein 1e+1 At5g27670 HTA7 (HISTONE H2A 7) O.I. H.G. S.X.
0.19 15.1 0.93 Os01g0805900 D30716.1 - Tubulin beta-2 chain (Beta-2 tubulin) 0 At5g12250 TUB6 (BETA-6 TUBULIN) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.6 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
10.3 98.1 GSM195228 Embryo GSE7951 Genome-wide gene expression profiling of rice stigma
9.0 97.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.7 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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