CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0657400

Gene name
Homology with Arabidopsis Similar to At4g17490: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) (HF=9e-3)

Module size 39 genes

NF 0.33

%ile 36.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.9 0.91 Os01g0657400 AY323486.1 - Ethylene responsive element binding factor 5(AtERF5) 9e-3 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) O.I. H.G. S.X.
0.57 77.0 0.95 Os03g0786600 AK109838.1 - Plant specific of unknown function DUF860 familyprotein 2e-1 At1g22230 unknown protein O.I. H.G. S.X.
0.52 69.6 0.95 Os04g0616600 AK064641.1 - Protein kinase domain containing protein 1e-1 At3g09010 protein kinase family protein O.I. H.G. S.X.
0.51 68.7 0.96 Os07g0412501 9635.m02177 - - 3e-1 At5g26140 lysine decarboxylase family protein O.I. H.G. S.X.
0.49 64.4 0.94 Os03g0640300 CB684009 - Conserved hypothetical protein 6e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.48 63.7 0.94 Os08g0142300 9636.m00395 - - 3e-4 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.47 62.3 0.95 Os05g0328300 9633.m02369 - - 4e-4 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.45 58.8 0.93 Os09g0443800 AK107689.1 - Hypothetical protein 3e-1 At2g46735 unknown protein O.I. H.G. S.X.
0.41 52.4 0.95 Os12g0473700 9640.m02779 - - 3e+0 At4g30070 LCR59 (Low-molecular-weight cysteine-rich 59) O.I. H.G. S.X.
0.40 51.1 0.95 Os02g0684000 9630.m04453 - TPR-like domain containing protein 5e+0 At3g57930 unknown protein O.I. H.G. S.X.
0.40 51.1 0.95 Os11g0207300 9639.m00955 - Conserved hypothetical protein 7e-1 At1g12244 DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase O.I. H.G. S.X.
0.40 51.1 0.96 Os10g0456701 NM_196820.1 - - 3e+0 At3g24065 - O.I. H.G. S.X.
0.40 51.1 0.96 Os08g0515100 NM_188989.1 - Sulfotransferase family protein 2e-3 At3g45080 sulfotransferase family protein O.I. H.G. S.X.
0.39 48.3 0.95 Os02g0661300 AK106503.1 - Conserved hypothetical protein 5e-4 At2g17420 NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A) O.I. H.G. S.X.
0.36 44.0 0.95 Os11g0614200 9639.m03650 - - 2e-1 At2g22370 unknown protein O.I. H.G. S.X.
0.36 44.0 0.96 Os09g0458200 AK108675.1 - Conserved hypothetical protein 2e+0 At1g24450 NFD2 (NUCLEAR FUSION DEFECTIVE 2) O.I. H.G. S.X.
0.36 44.0 0.97 Os02g0734700 9630.m04916 - Conserved hypothetical protein 1e+0 At1g17520 DNA-binding protein, putative O.I. H.G. S.X.
0.36 44.0 0.95 Os07g0508900 9635.m03194 - Zn-finger, Dof type domain containing protein 6e-10 At1g28310 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.35 41.7 0.96 Os09g0371400 9637.m01753 - - 2e-4 At5g10190 transporter-related O.I. H.G. S.X.
0.35 41.7 0.96 Os06g0657901 NM_193102.1 - - 2e-1 At5g11930 glutaredoxin family protein O.I. H.G. S.X.
0.34 40.0 0.96 Os05g0269000 CB666416 - Hypothetical protein 3e-2 At4g39890 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) O.I. H.G. S.X.
0.34 40.0 0.93 Os03g0381100 9631.m02597 - ab initio prediction with EST support 2e-4 At1g34150 tRNA pseudouridine synthase family protein O.I. H.G. S.X.
0.31 34.5 0.95 Os01g0149500 AK100477.1 - - 4e-2 At3g05820 beta-fructofuranosidase/ catalytic O.I. H.G. S.X.
0.31 34.5 0.96 Os12g0178600 9640.m00718 - - 3e-1 At2g34300 dehydration-responsive protein-related O.I. H.G. S.X.
0.31 34.5 0.97 Os07g0514700 9635.m03256 - - 9e-1 At5g55790 unknown protein O.I. H.G. S.X.
0.31 34.5 0.96 Os08g0527700 9636.m04226 - Hypothetical protein 1e+1 At5g55000 FIP2 O.I. H.G. S.X.
0.28 31.1 0.95 Os11g0295700 9639.m01769 - - 5e+0 At4g39570 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.28 31.1 0.95 Os08g0186900 9636.m00828 - - 3e+0 At5g64920 CIP8 (COP1-INTERACTING PROTEIN 8) O.I. H.G. S.X.
0.27 27.5 0.97 Os12g0448100 9640.m02506 - - 1e+0 At4g16240 unknown protein O.I. H.G. S.X.
0.27 27.5 0.93 Os01g0129800 AK107910.1 - Conserved hypothetical protein 3e-1 At2g35960 NHL12 O.I. H.G. S.X.
0.27 27.5 0.96 Os09g0416400 9637.m02146 - Conserved hypothetical protein 5e-1 At3g18560 unknown protein O.I. H.G. S.X.
0.27 27.5 0.97 Os04g0422700 AK111485.1 - Conserved hypothetical protein 5e-1 At2g11005 glycine-rich protein O.I. H.G. S.X.
0.27 27.5 0.95 Os02g0795800 9630.m05489 - - 3e-21 At2g24260 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.24 22.4 0.94 Os01g0913400 AK099881.1 - TPR-like domain containing protein 7e-3 At3g08000 RNA-binding protein, putative O.I. H.G. S.X.
0.24 22.4 0.96 Os10g0402400 NM_196396.1 - Transferase family protein 1e+1 At5g11590 TINY2 (TINY2) O.I. H.G. S.X.
0.24 22.4 0.94 Os05g0197100 9633.m00945 - - 2e+0 At2g42300 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.23 21.2 0.95 Os02g0312800 AK106393.1 - Ankyrin repeat containing protein 3e-16 At1g10430 PP2A-2 O.I. H.G. S.X.
0.16 11.3 0.94 Os08g0197300 AK064147.1 - Conserved hypothetical protein 7e-2 At5g19090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.15 10.3 0.93 Os07g0227300 9635.m01226 - - 4e+0 At5g01881 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.89	96.9	0.91	Os01g0657400	AY323486.1	-	Ethylene responsive element binding factor 5(AtERF5)	9e-3	At4g17490	ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.57	77.0	0.95	Os03g0786600	AK109838.1	-	Plant specific of unknown function DUF860 familyprotein	2e-1	At1g22230	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	0.95	Os04g0616600	AK064641.1	-	Protein kinase domain containing protein	1e-1	At3g09010	protein kinase family protein	O.I.	H.G.	S.X.
0.51	68.7	0.96	Os07g0412501	9635.m02177	-	-	3e-1	At5g26140	lysine decarboxylase family protein	O.I.	H.G.	S.X.
0.49	64.4	0.94	Os03g0640300	CB684009	-	Conserved hypothetical protein	6e-1	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.48	63.7	0.94	Os08g0142300	9636.m00395	-	-	3e-4	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.
0.47	62.3	0.95	Os05g0328300	9633.m02369	-	-	4e-4	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.45	58.8	0.93	Os09g0443800	AK107689.1	-	Hypothetical protein	3e-1	At2g46735	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.95	Os12g0473700	9640.m02779	-	-	3e+0	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	O.I.	H.G.	S.X.
0.40	51.1	0.95	Os02g0684000	9630.m04453	-	TPR-like domain containing protein	5e+0	At3g57930	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.95	Os11g0207300	9639.m00955	-	Conserved hypothetical protein	7e-1	At1g12244	DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os10g0456701	NM_196820.1	-	-	3e+0	At3g24065	-	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os08g0515100	NM_188989.1	-	Sulfotransferase family protein	2e-3	At3g45080	sulfotransferase family protein	O.I.	H.G.	S.X.
0.39	48.3	0.95	Os02g0661300	AK106503.1	-	Conserved hypothetical protein	5e-4	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os11g0614200	9639.m03650	-	-	2e-1	At2g22370	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os09g0458200	AK108675.1	-	Conserved hypothetical protein	2e+0	At1g24450	NFD2 (NUCLEAR FUSION DEFECTIVE 2)	O.I.	H.G.	S.X.
0.36	44.0	0.97	Os02g0734700	9630.m04916	-	Conserved hypothetical protein	1e+0	At1g17520	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.36	44.0	0.95	Os07g0508900	9635.m03194	-	Zn-finger, Dof type domain containing protein	6e-10	At1g28310	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os09g0371400	9637.m01753	-	-	2e-4	At5g10190	transporter-related	O.I.	H.G.	S.X.
0.35	41.7	0.96	Os06g0657901	NM_193102.1	-	-	2e-1	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.
0.34	40.0	0.96	Os05g0269000	CB666416	-	Hypothetical protein	3e-2	At4g39890	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	O.I.	H.G.	S.X.
0.34	40.0	0.93	Os03g0381100	9631.m02597	-	ab initio prediction with EST support	2e-4	At1g34150	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.
0.31	34.5	0.95	Os01g0149500	AK100477.1	-	-	4e-2	At3g05820	beta-fructofuranosidase/ catalytic	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os12g0178600	9640.m00718	-	-	3e-1	At2g34300	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os07g0514700	9635.m03256	-	-	9e-1	At5g55790	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os08g0527700	9636.m04226	-	Hypothetical protein	1e+1	At5g55000	FIP2	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os11g0295700	9639.m01769	-	-	5e+0	At4g39570	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os08g0186900	9636.m00828	-	-	3e+0	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os12g0448100	9640.m02506	-	-	1e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.93	Os01g0129800	AK107910.1	-	Conserved hypothetical protein	3e-1	At2g35960	NHL12	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os09g0416400	9637.m02146	-	Conserved hypothetical protein	5e-1	At3g18560	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.97	Os04g0422700	AK111485.1	-	Conserved hypothetical protein	5e-1	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os02g0795800	9630.m05489	-	-	3e-21	At2g24260	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.24	22.4	0.94	Os01g0913400	AK099881.1	-	TPR-like domain containing protein	7e-3	At3g08000	RNA-binding protein, putative	O.I.	H.G.	S.X.
0.24	22.4	0.96	Os10g0402400	NM_196396.1	-	Transferase family protein	1e+1	At5g11590	TINY2 (TINY2)	O.I.	H.G.	S.X.
0.24	22.4	0.94	Os05g0197100	9633.m00945	-	-	2e+0	At2g42300	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.23	21.2	0.95	Os02g0312800	AK106393.1	-	Ankyrin repeat containing protein	3e-16	At1g10430	PP2A-2	O.I.	H.G.	S.X.
0.16	11.3	0.94	Os08g0197300	AK064147.1	-	Conserved hypothetical protein	7e-2	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.15	10.3	0.93	Os07g0227300	9635.m01226	-	-	4e+0	At5g01881	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
23.0	99.3	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.6	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.7	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6	98.6	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.012 1 GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.010 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.012	1	GO:0006952	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
0.010	1	GO:0006915	A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os01g0657400
Gene name
Homology with Arabidopsis	Similar to At4g17490: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) (HF=9e-3)
Module size	39 genes
NF	0.33
%ile	36.8

Co-expression analysis

Gene ID Os01g0657400 Gene name Homology with ArabidopsisSimilar to At4g17490: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) (HF=9e-3) Module size 39 genes NF 0.33 %ile 36.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0657400

Gene name
Homology with Arabidopsis Similar to At4g17490: ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) (HF=9e-3)

Module size 39 genes

NF 0.33

%ile 36.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays