CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0632700

Gene name
Homology with Arabidopsis Similar to At5g37720: RNA and export factor-binding protein, putative (HF=5e+0)

Module size 6 genes

NF 0.25

%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.98 Os01g0632700 AK070692.1 - Hypothetical protein 5e+0 At5g37720 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.50 68.0 0.98 Os09g0560200 AK106791.1 - 26S protease regulatory subunit 6B (MIP224) (MB67interacting protein) (TAT-binding protein-7) (TBP-7).Splice isoform 2 3e-1 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0622800 AK063171.1 - Conserved hypothetical protein 2e-3 At3g52060 unknown protein O.I. H.G. S.X.
0.19 15.1 0.98 Os07g0239200 AK110962.1 - Conserved hypothetical protein 8e-1 At2g41705 camphor resistance CrcB family protein O.I. H.G. S.X.
0.16 11.3 0.98 Os08g0359366 9636.m02673 - - 1e+1 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.09 4.9 0.98 Os05g0376000 9633.m02844 - Glycoside hydrolase, family 19 protein 7e-11 At4g36960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.6 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.6 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377079 Genomic DNA - 45 day old leaf sample - mutant g6686 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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