Co-expression analysis

Gene ID Os01g0613900
Gene name
Homology with ArabidopsisSimilar to At2g34090: MEE18 (maternal effect embryo arrest 18) (HF=1e-15)
Module size 6 genes
NF 0.51
%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.96Os01g0613900AK119181.1-Protein of unknown function UPF0052 and CofDfamily protein1e-15At2g34090MEE18 (maternal effect embryo arrest 18)O.I.H.G.S.X.
0.6787.20.96Os04g0626700AK106652.1-Conserved hypothetical protein1e+0At4g02260RSH1 (RELA-SPOT HOMOLOG 1)O.I.H.G.S.X.
0.6181.20.96Os09g0383400AK103385.1-Helicase, C-terminal domain containing protein9e-5At1g59990DEAD/DEAH box helicase, putative (RH22)O.I.H.G.S.X.
0.5978.00.96Os06g0283200AK073829.1-Zn-finger-like, PHD finger domain containingprotein1e+0At1g08110lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.3644.00.96Os10g0477200AK067154.1-TPR-like domain containing protein6e-3At3g21470pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2117.90.96Os02g0597800AK072807.1--1e+0At5g23250succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.099.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.598.6GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.597.9GSM262020Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
7.497.5GSM375767gid1-3_ shoot_replicate 3GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
6.797.3GSM375765gid1-3_ shoot_replicate 1GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
5.897.0GSM375766gid1-3_ shoot_replicate 2GSE15046Transcriptome analysis of gibberellin-signaling mutants in riceLink to GEO
5.296.7GSM262021Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2GSE10373Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthicaLink to GEO
4.896.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.696.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.696.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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