CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0611800

Gene name
Homology with Arabidopsis Similar to At5g55450: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=3e+0)

Module size 11 genes

NF 0.63

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.98 Os01g0611800 9629.m04087 - - 3e+0 At5g55450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.91 98.9 0.98 Os11g0180200 CB659899 - Tyrosine specific protein phosphatase familyprotein 7e+0 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.74 91.4 0.99 Os09g0359700 9637.m01649 - Target SNARE coiled-coil region domain containingprotein 2e-3 At3g45280 SYP72 (SYNTAXIN OF PLANTS 72) O.I. H.G. S.X.
0.71 89.6 0.98 Os04g0210700 9632.m01205 - Conserved hypothetical protein 2e+0 At2g26240 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os11g0472800 9639.m02553 - - 3e+0 At5g27840 TOPP8 O.I. H.G. S.X.
0.58 77.0 0.99 Os10g0378025 NM_196167.1 - - 4e+0 At5g50915 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.57 77.0 0.98 Os01g0555700 9629.m03550 - - 2e+0 At1g28070 - O.I. H.G. S.X.
0.53 71.3 0.99 Os02g0463100 9630.m02493 - - 5e-3 At4g09660 - O.I. H.G. S.X.
0.50 68.0 0.98 Os09g0261400 AK105353.1 - - 3e-1 At1g51080 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0188900 9630.m00874 - Cyclin-like F-box domain containing protein 6e-1 At3g48920 AtMYB45 (myb domain protein 45) O.I. H.G. S.X.
0.48 63.7 0.99 Os05g0236600 9633.m01287 - - 6e-2 At4g19090 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.7 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
13.4 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.1 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage