CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0609900

Gene name
Homology with Arabidopsis Similar to At1g15520: PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) (HF=8e-22)

Module size 8 genes

NF 0.68

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 53.9 0.86 Os01g0609900 AK121722.1 - PDR-like ABC transporter (PDR4 ABC transporter) 8e-22 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) O.I. H.G. S.X.
0.77 93.1 0.86 Os06g0218900 9634.m01125 - LMBR1-like conserved region domain containingprotein 3e-1 At1g02450 NIMIN1 (NIM1-INTERACTING 1) O.I. H.G. S.X.
0.74 91.4 0.86 Os05g0135400 AK063587.1 - Plant peroxidase family protein 4e-1 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) O.I. H.G. S.X.
0.70 88.4 0.84 Os10g0139700 AK067458.1 - Cytochrome P450 family protein 2e-4 At1g64940 CYP89A6 O.I. H.G. S.X.
0.67 87.2 0.84 Os03g0187800 AK105352.1 - Protein of unknown function DUF250 domaincontaining protein 3e+0 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.67 87.2 0.86 Os04g0597800 AK101480.1 - Oligopeptide transporter, kidney isoform (Peptidetransporter 2) (Kidney H+/peptide cotransporter) 2e-2 At5g19640 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.63 82.7 0.86 Os11g0482200 AK062443.1 - Hypothetical protein 3e-1 At2g34585 unknown protein O.I. H.G. S.X.
0.60 79.7 0.87 Os04g0634500 AK071656.1 - KI domain interacting kinase 1 1e-5 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.3 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.033 1 GO:0006857 The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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