Co-expression analysis

Gene ID Os01g0608000
Gene name
Homology with ArabidopsisSimilar to At3g08680: leucine-rich repeat transmembrane protein kinase, putative (HF=2e-1)
Module size 9 genes
NF 0.29
%ile 30.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.96Os01g0608000D24997-Protein kinase domain containing protein2e-1At3g08680leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.4863.70.97Os07g0141600AK103156.1-Pre-mRNA processing ribonucleoprotein, bindingregion domain containing protein1e-17At1g60170emb1220 (embryo defective 1220)O.I.H.G.S.X.
0.4660.90.98Os06g02634009634.m01526-Naringenin-chalcone synthase family protein1e-2At2g26640KCS11 (3-KETOACYL-COA SYNTHASE 11)O.I.H.G.S.X.
0.3236.30.97Os02g0699900AK069704.1-Bromodomain transcription factor containingprotein6e-1At5g63905unknown proteinO.I.H.G.S.X.
0.3134.50.98Os06g0357800AK070985.1-Conserved hypothetical protein4e+0At4g27810unknown proteinO.I.H.G.S.X.
0.2727.50.97Os01g0602600NM_192650.1--7e-1At1g04445zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2524.10.97Os03g02791009631.m01676--2e+0At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.1915.10.97Os10g0402900NM_196399.1--9e-2At4g03410peroxisomal membrane protein-relatedO.I.H.G.S.X.
0.149.30.97Os11g06038019639.m03556--9e-1At5g63480unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.299.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.599.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.798.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.298.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.198.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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