CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0604600

Gene name
Homology with Arabidopsis Similar to At3g48675: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.49

%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein O.I. H.G. S.X.
0.67 87.2 0.98 Os09g0116000 9637.m00121 - - 4e+0 At5g64040 PSAN O.I. H.G. S.X.
0.61 81.2 0.98 Os10g0106300 9638.m00073 - - 1e+1 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.46 60.9 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.28 31.1 0.98 Os02g0527700 AK069409.1 - Conserved hypothetical protein 6e-1 At2g23340 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.27 27.5 0.98 Os01g0839000 NM_190518.1 - - 3e-1 At2g26120 glycine-rich protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.3 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.6 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.2 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1608157_at, orthologous to the query gene, Os01g0604600

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1608157_at At3g48675 - - 3e-7 At4g11530 kinase O.I. H.G. S.X.
0.38 53.6 1608411_at At3g48675 - - 7e-1 At5g26640 unknown protein O.I. H.G. S.X.
0.36 50.7 1621365_at At3g48675 - - 9e-69 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.34 46.8 1622342_at At3g48675 - - 4e-20 At4g25880 APUM6 (Arabidopsis Pumilio 6) O.I. H.G. S.X.
0.31 41.3 1621827_at At3g48675 similar to flowering locus C-like MADS-box protein - 4e-11 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.31 41.3 1609601_at At3g48675 - - 5e-7 At3g25500 AFH1 (FORMIN HOMOLOGY 1) O.I. H.G. S.X.
0.27 34.0 1619684_at At3g48675 - - 1e-10 At1g49050 aspartyl protease family protein O.I. H.G. S.X.
0.23 27.5 1615454_at At3g48675 - - 3e-1 At3g17152 enzyme inhibitor/ pectinesterase O.I. H.G. S.X.
0.19 20.9 1621497_at At3g48675 hypothetical protein LOC100242262 - 2e-3 At1g72770 HAB1 (HOMOLOGY TO ABI1) O.I. H.G. S.X.
0.19 20.9 1619312_a_at At3g48675 hypothetical protein LOC100255878 /// hypothetical protein LOC100245575 - 2e-75 At4g37550 formamidase, putative / formamide amidohydrolase, putative O.I. H.G. S.X.
0.19 20.9 1621407_at At3g48675 hypothetical protein LOC100255878 - 2e-75 At4g37550 formamidase, putative / formamide amidohydrolase, putative O.I. H.G. S.X.
0.18 19.4 1613219_at At3g48675 - - 4e-74 At5g28850 calcium-binding EF hand family protein O.I. H.G. S.X.
0.17 18.2 1621556_s_at At3g48675 hypothetical protein LOC100246330 /// hypothetical protein LOC100266521 - 2e-4 At2g22430 ATHB6 O.I. H.G. S.X.
0.17 18.2 1606450_at At3g48675 - - 2e-12 At3g20560 ATPDIL5-3 (PDI-LIKE 5-3) O.I. H.G. S.X.
0.16 16.7 1612824_at At3g48675 - - 3e+0 At3g28230 - O.I. H.G. S.X.
0.15 15.6 1611242_at At3g48675 hypothetical protein LOC100248144 - 4e+0 At4g18500 unknown protein O.I. H.G. S.X.
0.13 13.3 1619464_at At3g48675 hypothetical protein LOC100254564 - 3e-11 At1g79160 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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