CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0602400

Gene name
Homology with Arabidopsis Similar to At3g14650: CYP72A11 (HF=6e-2)

Module size 6 genes

NF 0.27

%ile 27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.78 Os01g0602400 AK107349.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 6e-2 At3g14650 CYP72A11 O.I. H.G. S.X.
0.31 34.5 0.83 Os05g0530400 AY344492.1 - Heat shock factor protein 1 (HSF 1) (Heat shocktranscription factor 1) (HSTF 1) 1e-9 At5g03720 AT-HSFA3 O.I. H.G. S.X.
0.31 34.5 0.85 Os04g0632100 AF403127.1 - - 9e-8 At4g21370 S-locus protein kinase, putative O.I. H.G. S.X.
0.22 19.4 0.82 Os01g0155500 AK099840.1 - Resistance protein candidate (Fragment) 1e-1 At5g54380 THE1 (THESEUS1) O.I. H.G. S.X.
0.21 17.9 0.84 Os01g0728300 AK073238.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 1e+0 At3g14680 CYP72A14 O.I. H.G. S.X.
0.17 12.6 0.81 Os01g0558100 AK111021.1 - Glutathione S-transferase TSI-1 (EC 2.5.1.18)(Glutathione S- transferase 1) 8e-3 At5g19090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.6 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.8 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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