CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0597600

Gene name
Homology with Arabidopsis Similar to At2g35480: unknown protein (HF=5e+0)

Module size 10 genes

NF 0.47

%ile 60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.78 Os01g0597600 AU056799 - Amino acid/polyamine transporter II family protein 5e+0 At2g35480 unknown protein O.I. H.G. S.X.
0.86 96.4 0.81 Os09g0457900 AK067195.1 - AP2 domain containing protein RAP2.6 (Fragment) 5e-1 At3g23230 ethylene-responsive factor, putative O.I. H.G. S.X.
0.67 87.2 0.83 Os01g0821600 AK108657.1 - DNA-binding WRKY domain containing protein 2e-1 At4g09460 ATMYB6 O.I. H.G. S.X.
0.57 77.0 0.83 Os09g0522000 AY166833.1 - CBF-like protein 5e-1 At5g14360 ubiquitin family protein O.I. H.G. S.X.
0.53 71.3 0.86 Os03g0315400 BI807304 - MYB-related protein 340 4e+0 At5g27247 unknown protein O.I. H.G. S.X.
0.52 69.6 0.83 Os05g0552800 9633.m04468 - Conserved hypothetical protein 4e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.36 44.0 0.88 Os07g0680600 AK059307.1 - Conserved hypothetical protein 5e+0 At5g18200 UTP:galactose-1-phosphate uridylyltransferase/ ribose-5-phosphate adenylyltransferase O.I. H.G. S.X.
0.35 41.7 0.88 Os04g0684900 D64039.1 - Ribonuclease CAF1 family protein 3e+0 At5g37780 CAM1 (CALMODULIN 1) O.I. H.G. S.X.
0.35 41.7 0.88 Os03g0292100 9631.m01785 - Protein phosphatase 2C family protein 8e-1 At4g08260 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.26 25.6 0.82 Os10g0521900 AK061038.1 - Rhomboid-like protein family protein 1e-8 At5g07250 ATRBL3 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.2 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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