CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0593100

Gene name
Homology with Arabidopsis Similar to At1g43330: myb family protein-related (HF=2e+0)

Module size 7 genes

NF 0.63

%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.98 Os01g0593100 NM_192598.1 - Hypothetical protein 2e+0 At1g43330 myb family protein-related O.I. H.G. S.X.
0.73 91.1 0.98 Os07g0456000 9635.m02632 - - 1e+0 At4g27150 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 O.I. H.G. S.X.
0.63 82.7 0.98 Os05g0439750 9633.m03398 - - 1e-2 At2g41380 embryo-abundant protein-related O.I. H.G. S.X.
0.60 79.7 0.99 Os06g0528000 NM_196265.1 - - 1e+0 At5g52570 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) O.I. H.G. S.X.
0.52 69.6 0.97 Os08g0295201 9636.m01953 - - 3e+0 At1g24577 unknown protein O.I. H.G. S.X.
0.48 63.7 0.98 Os08g0479900 9636.m03757 - - 3e+0 At5g58710 ROC7 O.I. H.G. S.X.
0.43 55.4 0.98 Os09g0259366 9637.m00619 - - 6e+0 At5g60400 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.0 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.8 98.7 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
14.6 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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