Co-expression analysis

Gene ID Os01g0588500
Gene name
Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=3e-60)
Module size 6 genes
NF 0.12
%ile 9.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.94Os01g0588500AK103037.1-Protein kinase APK1A (EC 2.7.1.-)3e-60At3g01300protein kinase, putativeO.I.H.G.S.X.
0.4051.10.93Os03g0302700AK112010.1-Zn-finger, RING domain containing protein1e-1At3g05870APC11O.I.H.G.S.X.
0.2321.20.94Os09g0361700AK063109.1-Protein of unknown function UPF0203 family protein3e-3At3g22070proline-rich family proteinO.I.H.G.S.X.
0.149.30.94Os12g0639700AK069880.1--5e-8At5g15050glycosyltransferase family 14 protein / core-2/I-branching enzyme family proteinO.I.H.G.S.X.
0.116.50.94Os02g0698100AK060614.1-Conserved hypothetical protein7e-1At1g78410VQ motif-containing proteinO.I.H.G.S.X.
0.042.00.94Os03g0740600AK101589.1-Deoxyhypusine synthase (EC 2.5.1.46)1e-15At5g05920DHS (DEOXYHYPUSINE SYNTHASE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.299.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.397.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.497.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
5.796.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.596.8GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.896.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.796.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.496.2GSM100443Rice Bala 0ppm Arsenate (Control) Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0008612The posttranslational modification of peptidyl-lysine to form hypusine, N6-(4-amino-2-hydroxybutyl)-L-lysine.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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