CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0582600

Gene name
Homology with Arabidopsis Similar to At4g29780: unknown protein (HF=7e-5)

Module size 9 genes

NF 0.60

%ile 81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.91 Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein O.I. H.G. S.X.
0.80 94.6 0.92 Os01g0934100 AK100995.1 - C2 domain containing protein 7e-1 At5g62720 integral membrane HPP family protein O.I. H.G. S.X.
0.63 82.7 0.91 Os03g0787000 AK065950.1 - Syntaxin 1e-2 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.60 79.7 0.92 Os03g0764100 AF332876.1 - Conserved hypothetical protein 6e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.59 78.0 0.91 Os03g0189100 AK066877.1 - Conserved hypothetical protein 2e+0 At5g02150 binding O.I. H.G. S.X.
0.55 73.7 0.91 Os05g0343400 AK121190.1 - WRKY transcription factor 53 (Transcription factorWRKY12) 3e-7 At5g07100 WRKY26 O.I. H.G. S.X.
0.50 68.0 0.92 Os05g0497300 AK111755.1 - Ethylene responsive element binding factor 5(AtERF5) 4e-14 At3g15210 ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4) O.I. H.G. S.X.
0.47 62.3 0.92 Os04g0685300 AF039532.1 - Harpin-induced 1 domain containing protein 1e-1 At2g24440 selenium binding O.I. H.G. S.X.
0.43 55.4 0.91 Os03g0761100 AK066083.1 - Protein phosphatase 2C-like protein 6e-8 At4g33920 protein phosphatase 2C family protein / PP2C family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.8 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.7 97.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.8 96.5 GSM159191 Young inflorescence (P1, upto 3 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
4.5 96.3 GSM159197 Inflorescence (P3, 5 - 10 cm), biological rep 3 GSE6893 Expression data for reproductive development in rice
4.3 96.1 GSM159189 Young inflorescence (P1, upto 3 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
4.2 96.0 GSM159190 Young inflorescence (P1, upto 3 cm), biological rep 2 GSE6893 Expression data for reproductive development in rice
4.0 95.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM429982 Rice wild-type panicle rep1 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
4.0 95.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.036 1 GO:0006470 The process of removing one or more phosphoric residues from a protein.
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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