CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0580400

Gene name
Homology with Arabidopsis Similar to At5g63135: unknown protein (HF=3e+0)

Module size 12 genes

NF 0.68

%ile 91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.85 Os01g0580400 AY332467.1 - Histone-fold domain containing protein 3e+0 At5g63135 unknown protein O.I. H.G. S.X.
0.85 96.1 0.84 Os01g0174600 AK107662.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 2e-3 At5g36960 unknown protein O.I. H.G. S.X.
0.80 94.6 0.88 Os05g0304800 9633.m02127 - Histone-fold domain containing protein 5e-1 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) O.I. H.G. S.X.
0.77 93.1 0.87 Os04g0380800 9632.m02963 - Conserved hypothetical protein 1e+0 At3g17600 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) O.I. H.G. S.X.
0.76 92.2 0.85 Os05g0156900 CA762976 - Pyrophosphate-energized vacuolar membrane protonpump (EC 3.6.1.1) (Pyrophosphate-energized inorganicpyrophosphatase) (H+PPase) 3e-1 At2g47870 glutaredoxin family protein O.I. H.G. S.X.
0.69 87.9 0.88 Os06g0115000 AK108096.1 - Conserved hypothetical protein 6e-1 At3g10220 tubulin folding cofactor B O.I. H.G. S.X.
0.67 87.2 0.92 Os02g0463500 AK107401.1 - Serine carboxypeptidase I precursor (EC 3.4.16.5)(Carboxypeptidase C) 1e-2 At5g39300 ATEXPA25 (ARABIDOPSIS THALIANA EXPANSIN A25) O.I. H.G. S.X.
0.65 83.8 0.85 Os02g0725900 AJ300218.1 - Transcription factor CBF/NF-Y/archaeal histonedomain containing protein 2e+0 At4g18970 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.57 77.0 0.93 Os04g0505300 BI801070 - Conserved hypothetical protein 4e-1 At5g15725 unknown protein O.I. H.G. S.X.
0.56 76.3 0.87 Os01g0228500 AK119627.1 - Harpin-induced 1 domain containing protein 7e-1 At2g23310 ATRER1C1 O.I. H.G. S.X.
0.48 63.7 0.88 Os07g0457400 BI804529 - Conserved hypothetical protein 3e-1 At1g22970 unknown protein O.I. H.G. S.X.
0.44 58.1 0.92 Os02g0576400 AK107966.1 - Conserved hypothetical protein 7e+0 At4g26400 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.9 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.4 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.053 1 GO:0015992 The directed movement of protons (hydrogen ions) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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