CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0560000

Gene name
Homology with Arabidopsis Similar to At1g51780: ILL5 (HF=2e-4)

Module size 6 genes

NF 0.02

%ile 1.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.91 Os01g0560000 AY187620.1 - Auxin conjugate hydrolase (ILL5) 2e-4 At1g51780 ILL5 O.I. H.G. S.X.
0.38 46.9 0.93 Os04g0677500 D21297.1 - Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK) 1e-4 At3g04050 pyruvate kinase, putative O.I. H.G. S.X.
0.13 8.2 0.91 Os12g0145700 AK071391.1 - Pyruvate kinase family protein 2e-63 At3g52990 pyruvate kinase, putative O.I. H.G. S.X.
0.01 0.5 0.91 Os05g0323900 AU173300 - Manganese-superoxide dismutase precursor (EC1.15.1.1) 3e-1 At5g55560 protein kinase family protein O.I. H.G. S.X.
0.01 0.5 0.93 Os01g0921400 AK099844.1 - Exo70 exocyst complex subunit family protein 2e-2 At5g50380 ATEXO70F1 (exocyst subunit EXO70 family protein F1) O.I. H.G. S.X.
0.01 0.5 0.92 Os10g0564800 CA766884 - Calcium-binding EF-hand domain containing protein 7e-6 At5g47100 CBL9 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.4 98.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.3 97.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3 96.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.1 96.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.7 95.6 GSM159185 Y Leaf, biological rep 3 GSE6893 Expression data for reproductive development in rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.167 1 GO:0006801 The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
0.080 1 GO:0006887 A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.
0.043 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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