Co-expression analysis

Gene ID Os01g0560000
Gene name
Homology with ArabidopsisSimilar to At1g51780: ILL5 (HF=2e-4)
Module size 6 genes
NF 0.02
%ile 1.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.91Os01g0560000AY187620.1-Auxin conjugate hydrolase (ILL5)2e-4At1g51780ILL5O.I.H.G.S.X.
0.3846.90.93Os04g0677500D21297.1-Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40)(PK)1e-4At3g04050pyruvate kinase, putativeO.I.H.G.S.X.
0.138.20.91Os12g0145700AK071391.1-Pyruvate kinase family protein2e-63At3g52990pyruvate kinase, putativeO.I.H.G.S.X.
0.010.50.91Os05g0323900AU173300-Manganese-superoxide dismutase precursor (EC1.15.1.1)3e-1At5g55560protein kinase family proteinO.I.H.G.S.X.
0.010.50.93Os01g0921400AK099844.1-Exo70 exocyst complex subunit family protein2e-2At5g50380ATEXO70F1 (exocyst subunit EXO70 family protein F1)O.I.H.G.S.X.
0.010.50.92Os10g0564800CA766884-Calcium-binding EF-hand domain containing protein7e-6At5g47100CBL9O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.498.6GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.397.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.197.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.697.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.596.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.396.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.196.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.795.6GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0006801The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.Link to AmiGO
0.0801GO:0006887A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process whereby most molecules are secreted from eukaryotic cells.Link to AmiGO
0.0431GO:0006096The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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