CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0558300

Gene name
Homology with Arabidopsis Similar to At1g51730: RWD domain-containing protein (HF=4e-14)

Module size 6 genes

NF 0.18

%ile 15.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.95 Os01g0558300 CB666652 - RWD domain containing protein 4e-14 At1g51730 RWD domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.95 Os03g0707900 AK067052.1 - Toc64 2e-2 At5g09420 ATTOC64-V (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V) O.I. H.G. S.X.
0.18 13.7 0.95 Os05g0378900 AK058213.1 - Conserved hypothetical protein 4e-7 At1g67930 Golgi transport complex protein-related O.I. H.G. S.X.
0.14 9.3 0.95 Os12g0567200 CB680362 - Diaminopimelate epimerase (EC 5.1.1.7) (DAPepimerase) 2e-17 At3g53580 diaminopimelate epimerase family protein O.I. H.G. S.X.
0.13 8.2 0.95 Os07g0608300 AK073927.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At5g20520 WAV2 (WAVY GROWTH 2) O.I. H.G. S.X.
0.07 3.7 0.95 Os03g0130400 AK059424.1 - Adenylate kinase family protein 2e-7 At2g37250 ADK (ADENOSINE KINASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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