CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0550800

Gene name
Homology with Arabidopsis Similar to At2g19360: unknown protein (HF=2e-4)

Module size 25 genes

NF 0.56

%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.79 Os01g0550800 AK064194.1 - Protein of unknown function DUF239 domaincontaining protein 2e-4 At2g19360 unknown protein O.I. H.G. S.X.
0.84 96.0 0.90 Os01g0652300 AK063136.1 - Hypothetical protein 5e+0 At1g30475 - O.I. H.G. S.X.
0.76 92.2 0.89 Os03g0320100 CF280794 - Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein 1e-15 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) O.I. H.G. S.X.
0.68 87.5 0.89 Os02g0512000 AK108786.1 - Auxin responsive SAUR protein family protein 2e-1 At5g33390 glycine-rich protein O.I. H.G. S.X.
0.67 87.2 0.90 Os08g0477500 AU033142 - S.tuberosum patatin (Fragment) 2e+0 At1g28280 VQ motif-containing protein O.I. H.G. S.X.
0.64 83.4 0.89 Os02g0157600 9630.m00558 - Rhodanese-like domain containing protein 6e+0 At5g66190 FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1) O.I. H.G. S.X.
0.61 81.2 0.87 Os02g0108800 AK099951.1 - Conserved hypothetical protein 5e-2 At1g04555 unknown protein O.I. H.G. S.X.
0.59 78.0 0.89 Os01g0218100 AK068593.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e+0 At5g24890 unknown protein O.I. H.G. S.X.
0.58 77.0 0.88 Os06g0692100 AK110293.1 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 O.I. H.G. S.X.
0.58 77.0 0.90 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.57 77.0 0.90 Os02g0745100 AK069842.1 - NOD26-like membrane integral protein ZmNIP2-1 2e-1 At4g17340 TIP2 O.I. H.G. S.X.
0.56 76.3 0.89 Os08g0108700 9636.m00070 - Conserved hypothetical protein 9e-2 At3g21260 glycolipid transfer protein-related O.I. H.G. S.X.
0.56 76.3 0.87 Os03g0368900 AK120411.1 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-2 At5g64120 peroxidase, putative O.I. H.G. S.X.
0.55 73.7 0.88 Os10g0323500 AK071372.1 - Beta-glucosidase 1e-6 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) O.I. H.G. S.X.
0.55 73.7 0.87 Os04g0652700 AK106059.1 - Nuclease I 6e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.54 71.9 0.84 Os07g0645300 AK108931.1 - Protein of unknown function DUF679 family protein 2e+0 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.53 71.3 0.87 Os07g0630400 AK060320.1 - Ribonuclease T2 family protein 2e+0 At3g22580 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.50 68.0 0.88 Os02g0572600 AK102182.1 - - 1e-2 At5g23120 HCF136 O.I. H.G. S.X.
0.47 62.3 0.89 Os07g0421300 AK121014.1 - Glycoside hydrolase, family 31 protein 7e-15 At3g23640 HGL1 (heteroglycan glucosidase 1) O.I. H.G. S.X.
0.44 58.1 0.88 Os03g0103100 AY466108.1 - Physical impedance induced protein 2e+0 At3g51510 unknown protein O.I. H.G. S.X.
0.44 58.1 0.88 Os03g0288000 AK103162.1 - Metallothionein-like protein 1 (MT-1) 4e-1 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.
0.43 55.4 0.89 Os04g0311400 AK121305.1 - Cysteine proteinase 1 precursor (EC 3.4.22.-) 3e-13 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) O.I. H.G. S.X.
0.39 48.3 0.88 Os04g0682100 AK070539.1 - C2 domain containing protein 3e-1 At4g08980 F-box family protein (FBW2) O.I. H.G. S.X.
0.39 48.3 0.89 Os03g0183000 AK060527.1 - AP2 domain containing protein RAP2.6 (Fragment) 6e-4 At1g43160 RAP2.6 (related to AP2 6) O.I. H.G. S.X.
0.38 46.9 0.89 Os09g0249000 AK072805.1 - - 6e-1 At1g11220 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.6	0.79	Os01g0550800	AK064194.1	-	Protein of unknown function DUF239 domaincontaining protein	2e-4	At2g19360	unknown protein	O.I.	H.G.	S.X.
0.84	96.0	0.90	Os01g0652300	AK063136.1	-	Hypothetical protein	5e+0	At1g30475	-	O.I.	H.G.	S.X.
0.76	92.2	0.89	Os03g0320100	CF280794	-	Alpha-L-arabinofuranosidase, C-terminal domaincontaining protein	1e-15	At3g10740	ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1)	O.I.	H.G.	S.X.
0.68	87.5	0.89	Os02g0512000	AK108786.1	-	Auxin responsive SAUR protein family protein	2e-1	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.
0.67	87.2	0.90	Os08g0477500	AU033142	-	S.tuberosum patatin (Fragment)	2e+0	At1g28280	VQ motif-containing protein	O.I.	H.G.	S.X.
0.64	83.4	0.89	Os02g0157600	9630.m00558	-	Rhodanese-like domain containing protein	6e+0	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	O.I.	H.G.	S.X.
0.61	81.2	0.87	Os02g0108800	AK099951.1	-	Conserved hypothetical protein	5e-2	At1g04555	unknown protein	O.I.	H.G.	S.X.
0.59	78.0	0.89	Os01g0218100	AK068593.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	1e+0	At5g24890	unknown protein	O.I.	H.G.	S.X.
0.58	77.0	0.88	Os06g0692100	AK110293.1	-	Protein kinase domain containing protein	1e-1	At1g48480	RKL1	O.I.	H.G.	S.X.
0.58	77.0	0.90	Os09g0280500	AK106988.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	7e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.57	77.0	0.90	Os02g0745100	AK069842.1	-	NOD26-like membrane integral protein ZmNIP2-1	2e-1	At4g17340	TIP2	O.I.	H.G.	S.X.
0.56	76.3	0.89	Os08g0108700	9636.m00070	-	Conserved hypothetical protein	9e-2	At3g21260	glycolipid transfer protein-related	O.I.	H.G.	S.X.
0.56	76.3	0.87	Os03g0368900	AK120411.1	-	Haem peroxidase, plant/fungal/bacterial familyprotein	1e-2	At5g64120	peroxidase, putative	O.I.	H.G.	S.X.
0.55	73.7	0.88	Os10g0323500	AK071372.1	-	Beta-glucosidase	1e-6	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.
0.55	73.7	0.87	Os04g0652700	AK106059.1	-	Nuclease I	6e-1	At2g37000	TCP family transcription factor, putative	O.I.	H.G.	S.X.
0.54	71.9	0.84	Os07g0645300	AK108931.1	-	Protein of unknown function DUF679 family protein	2e+0	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.53	71.3	0.87	Os07g0630400	AK060320.1	-	Ribonuclease T2 family protein	2e+0	At3g22580	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.50	68.0	0.88	Os02g0572600	AK102182.1	-	-	1e-2	At5g23120	HCF136	O.I.	H.G.	S.X.
0.47	62.3	0.89	Os07g0421300	AK121014.1	-	Glycoside hydrolase, family 31 protein	7e-15	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.
0.44	58.1	0.88	Os03g0103100	AY466108.1	-	Physical impedance induced protein	2e+0	At3g51510	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.88	Os03g0288000	AK103162.1	-	Metallothionein-like protein 1 (MT-1)	4e-1	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.
0.43	55.4	0.89	Os04g0311400	AK121305.1	-	Cysteine proteinase 1 precursor (EC 3.4.22.-)	3e-13	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.
0.39	48.3	0.88	Os04g0682100	AK070539.1	-	C2 domain containing protein	3e-1	At4g08980	F-box family protein (FBW2)	O.I.	H.G.	S.X.
0.39	48.3	0.89	Os03g0183000	AK060527.1	-	AP2 domain containing protein RAP2.6 (Fragment)	6e-4	At1g43160	RAP2.6 (related to AP2 6)	O.I.	H.G.	S.X.
0.38	46.9	0.89	Os09g0249000	AK072805.1	-	-	6e-1	At1g11220	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
39.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.0 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
39.0	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
26.0	99.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.4	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6	97.8	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0019307 The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.
0.033 1 GO:0009734 The series of molecular signals generated in response to detection of auxin.
0.033 1 GO:0050896 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

SF	Genes	GO ID	Process Name
0.074	1	GO:0019307	The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose.
0.033	1	GO:0009734	The series of molecular signals generated in response to detection of auxin.
0.033	1	GO:0050896	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os01g0550800
Gene name
Homology with Arabidopsis	Similar to At2g19360: unknown protein (HF=2e-4)
Module size	25 genes
NF	0.56
%ile	75.9

Co-expression analysis

Gene ID Os01g0550800 Gene name Homology with ArabidopsisSimilar to At2g19360: unknown protein (HF=2e-4) Module size 25 genes NF 0.56 %ile 75.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0550800

Gene name
Homology with Arabidopsis Similar to At2g19360: unknown protein (HF=2e-4)

Module size 25 genes

NF 0.56

%ile 75.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays