CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0541800

Gene name
Homology with Arabidopsis Similar to At5g23660: MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) (HF=3e+0)

Module size 6 genes

NF 0.07

%ile 5.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.88 Os01g0541800 AK066226.1 - MtN3 and saliva related transmembrane proteinfamily protein 3e+0 At5g23660 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) O.I. H.G. S.X.
0.16 11.3 0.89 Os08g0163500 AK060560.1 - Protein of unknown function DUF1005 family protein 4e-6 At5g26210 AL4 (ALFIN-LIKE 4) O.I. H.G. S.X.
0.15 10.3 0.88 Os09g0488700 AK062303.1 - - 7e-4 At4g12070 unknown protein O.I. H.G. S.X.
0.06 3.0 0.89 Os03g0203200 AK070827.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At3g03990 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.06 3.0 0.89 Os10g0417600 AK069385.1 - NAD-dependent epimerase/dehydratase family protein 7e-137 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) O.I. H.G. S.X.
0.02 1.0 0.89 Os03g0808300 AK109389.2 - Remorin, C-terminal region domain containingprotein 2e-1 At1g05270 TraB family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.7 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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