CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0531400

Gene name
Homology with Arabidopsis Similar to At2g34510: - (HF=3e-16)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.94 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.73 91.1 0.94 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) O.I. H.G. S.X.
0.67 87.2 0.94 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.67 87.2 0.94 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related O.I. H.G. S.X.
0.53 71.3 0.94 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein O.I. H.G. S.X.
0.30 32.7 0.94 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.71	89.6	0.94	Os01g0531400	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	O.I.	H.G.	S.X.
0.73	91.1	0.94	Os09g0363900	AK072899.1	-	Mandelonitrile lyase-like protein	1e-3	At1g72970	HTH (HOTHEAD)	O.I.	H.G.	S.X.
0.67	87.2	0.94	Os01g0756600	AK102373.1	-	Protein of unknown function DUF642 family protein	3e-16	At2g34510	-	O.I.	H.G.	S.X.
0.67	87.2	0.94	Os04g0649200	AK103112.1	-	Plant protein of unknown function DUF869 familyprotein	4e-4	At2g23360	transport protein-related	O.I.	H.G.	S.X.
0.53	71.3	0.94	Os04g0517000	AK101663.1	-	Conserved hypothetical protein	3e-2	At1g11700	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.94	Os05g0406800	AK062566.1	-	Leucine-rich repeat, plant specific containingprotein	2e-2	At3g53235	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.9	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.2	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.0	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.301.2.A1_x_at, orthologous to the query gene, Os01g0531400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 88.6 Zm.301.2.A1_x_at At2g34510 hypothetical protein LOC100276367 - 4e-9 At2g34510 - O.I. H.G. S.X.
0.28 28.1 Zm.2702.3.A1_at At2g34510 - - 3e-2 At5g14440 - O.I. H.G. S.X.
0.25 21.3 Zm.14974.1.A1_at At2g34510 hypothetical protein LOC100276645 - 2e+1 At5g42070 unknown protein O.I. H.G. S.X.
0.23 18.6 Zm.609.1.S1_at At2g34510 small basic membrane intrinsic protein1a - 9e+0 At5g63270 nitrate-responsive NOI protein, putative O.I. H.G. S.X.
0.22 16.9 Zm.19354.1.A1_at At2g34510 hypothetical protein LOC100279856 - 9e-1 At3g29050 receptor-like protein kinase-related O.I. H.G. S.X.
0.19 12.8 Zm.9990.1.A1_at At2g34510 protein SEY1 - 6e-16 At1g72960 root hair defective 3 GTP-binding (RHD3) family protein O.I. H.G. S.X.
0.19 12.8 Zm.9812.1.A1_at At2g34510 - - 1e-19 At3g09840 CDC48 (CELL DIVISION CYCLE 48) O.I. H.G. S.X.
0.18 11.6 Zm.18442.1.A1_at At2g34510 - - 4e+0 At5g37475 translation initiation factor-related O.I. H.G. S.X.
0.18 11.6 Zm.747.1.A1_at At2g34510 hypothetical protein LOC100191588 - 3e-22 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.18 11.6 Zm.15487.1.S1_at At2g34510 MPK17-1 - putative MAPK - 2e-51 At3g18040 MPK9 (MAP KINASE 9) O.I. H.G. S.X.
0.14 7.7 Zm.4082.1.A1_at At2g34510 - - 2e-1 At3g54640 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) O.I. H.G. S.X.
0.13 6.8 Zm.7657.1.A1_at At2g34510 hypothetical protein LOC100278001 - 1e+0 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.12 5.9 Zm.8200.1.S1_at At2g34510 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 - 5e-1 At5g21090 leucine-rich repeat protein, putative O.I. H.G. S.X.
0.12 5.9 Zm.4601.1.A1_at At2g34510 - - 2e+0 At4g21585 ENDO4 (endonuclease 4) O.I. H.G. S.X.
0.11 5.3 Zm.3633.3.S1_x_at At2g34510 ascorbate peroxidase - 6e-12 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.
0.11 5.3 Zm.6949.1.S1_at At2g34510 - - 8e-16 At4g31480 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative O.I. H.G. S.X.
0.06 2.3 Zm.3223.3.A1_a_at At2g34510 hypothetical protein LOC100216794 /// ribosomal protein13 - 8e-23 At4g00100 ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) O.I. H.G. S.X.
0.06 2.3 Zm.6705.1.S1_at At2g34510 hypothetical protein LOC100276359 - 9e-3 At4g27595 unknown protein O.I. H.G. S.X.
0.04 1.5 Zm.6977.2.A1_at At2g34510 hypothetical protein LOC100192796 /// hypothetical protein LOC100276045 /// hypothetical protein LOC100277812 /// hypothetical protein LOC100278532 - 4e-19 At3g48560 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) O.I. H.G. S.X.
0.04 1.5 Zm.7788.1.A1_at At2g34510 anthocyanidin 3-O-glucosyltransferase - 9e-1 At3g24093 - O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.72	88.6	Zm.301.2.A1_x_at	At2g34510	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	O.I.	H.G.	S.X.
0.28	28.1	Zm.2702.3.A1_at	At2g34510	-	-	3e-2	At5g14440	-	O.I.	H.G.	S.X.
0.25	21.3	Zm.14974.1.A1_at	At2g34510	hypothetical protein LOC100276645	-	2e+1	At5g42070	unknown protein	O.I.	H.G.	S.X.
0.23	18.6	Zm.609.1.S1_at	At2g34510	small basic membrane intrinsic protein1a	-	9e+0	At5g63270	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.
0.22	16.9	Zm.19354.1.A1_at	At2g34510	hypothetical protein LOC100279856	-	9e-1	At3g29050	receptor-like protein kinase-related	O.I.	H.G.	S.X.
0.19	12.8	Zm.9990.1.A1_at	At2g34510	protein SEY1	-	6e-16	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	O.I.	H.G.	S.X.
0.19	12.8	Zm.9812.1.A1_at	At2g34510	-	-	1e-19	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.
0.18	11.6	Zm.18442.1.A1_at	At2g34510	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.
0.18	11.6	Zm.747.1.A1_at	At2g34510	hypothetical protein LOC100191588	-	3e-22	At1g16180	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.
0.18	11.6	Zm.15487.1.S1_at	At2g34510	MPK17-1 - putative MAPK	-	2e-51	At3g18040	MPK9 (MAP KINASE 9)	O.I.	H.G.	S.X.
0.14	7.7	Zm.4082.1.A1_at	At2g34510	-	-	2e-1	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	O.I.	H.G.	S.X.
0.13	6.8	Zm.7657.1.A1_at	At2g34510	hypothetical protein LOC100278001	-	1e+0	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.12	5.9	Zm.8200.1.S1_at	At2g34510	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	5e-1	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.
0.12	5.9	Zm.4601.1.A1_at	At2g34510	-	-	2e+0	At4g21585	ENDO4 (endonuclease 4)	O.I.	H.G.	S.X.
0.11	5.3	Zm.3633.3.S1_x_at	At2g34510	ascorbate peroxidase	-	6e-12	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.
0.11	5.3	Zm.6949.1.S1_at	At2g34510	-	-	8e-16	At4g31480	coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative	O.I.	H.G.	S.X.
0.06	2.3	Zm.3223.3.A1_a_at	At2g34510	hypothetical protein LOC100216794 /// ribosomal protein13	-	8e-23	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.
0.06	2.3	Zm.6705.1.S1_at	At2g34510	hypothetical protein LOC100276359	-	9e-3	At4g27595	unknown protein	O.I.	H.G.	S.X.
0.04	1.5	Zm.6977.2.A1_at	At2g34510	hypothetical protein LOC100192796 /// hypothetical protein LOC100276045 /// hypothetical protein LOC100277812 /// hypothetical protein LOC100278532	-	4e-19	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	O.I.	H.G.	S.X.
0.04	1.5	Zm.7788.1.A1_at	At2g34510	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os01g0531400
Gene name
Homology with Arabidopsis	Similar to At2g34510: - (HF=3e-16)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expression analysis

Gene ID Os01g0531400 Gene name Homology with ArabidopsisSimilar to At2g34510: - (HF=3e-16) Module size 6 genes NF 0.61 %ile 82.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os01g0531400

Gene name
Homology with Arabidopsis Similar to At2g34510: - (HF=3e-16)

Module size 6 genes

NF 0.61

%ile 82.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera