CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0531400

Gene name
Homology with Arabidopsis Similar to At2g34510: - (HF=3e-16)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.94 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.73 91.1 0.94 Os09g0363900 AK072899.1 - Mandelonitrile lyase-like protein 1e-3 At1g72970 HTH (HOTHEAD) O.I. H.G. S.X.
0.67 87.2 0.94 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.67 87.2 0.94 Os04g0649200 AK103112.1 - Plant protein of unknown function DUF869 familyprotein 4e-4 At2g23360 transport protein-related O.I. H.G. S.X.
0.53 71.3 0.94 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein O.I. H.G. S.X.
0.30 32.7 0.94 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.9 99.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.0 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.2840.1.S1_at, orthologous to the query gene, Os01g0531400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 Ta.2840.1.S1_at At2g34510 - - 4e+0 At1g58007 unknown protein O.I. H.G. S.X.
0.50 72.4 Ta.5845.2.A1_at At2g34510 - - 5e+0 Atmg01220 - O.I. H.G. S.X.
0.50 72.4 Ta.7648.1.A1_at At2g34510 - - 2e+0 At4g00810 60S acidic ribosomal protein P1 (RPP1B) O.I. H.G. S.X.
0.50 72.4 Ta.28733.1.S1_at At2g34510 high mobility group protein-like - 6e-4 At5g59370 ACT4 (ACTIN 4) O.I. H.G. S.X.
0.40 58.4 Ta.9218.1.A1_at At2g34510 - - 1e-1 At1g09320 agenet domain-containing protein O.I. H.G. S.X.
0.33 46.9 Ta.11895.1.S1_at At2g34510 - - 4e-6 At1g25280 AtTLP10 (TUBBY LIKE PROTEIN 10) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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