CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0528900

Gene name
Homology with Arabidopsis Similar to At4g31150: endonuclease V family protein (HF=4e+0)

Module size 6 genes

NF 0.87

%ile 99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.98 Os01g0528900 9629.m03236 - - 4e+0 At4g31150 endonuclease V family protein O.I. H.G. S.X.
0.91 98.9 0.99 Os10g0350100 NM_195936.1 - - 4e-1 At3g47710 bHLH family protein O.I. H.G. S.X.
0.83 95.8 0.98 Os04g0366500 9632.m02816 - - 1e+1 At3g51060 STY1 (STYLISH 1) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0521100 9629.m03165 - Hypothetical protein 3e+0 At4g10420 - O.I. H.G. S.X.
0.80 94.6 0.99 Os08g0426200 9636.m03305 - - 2e+0 At3g17580 unknown protein O.I. H.G. S.X.
0.63 82.7 0.98 Os09g0356700 9637.m01615 - - 6e-1 At4g21610 LOL2 (LSD ONE LIKE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
73.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
59.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
32.2 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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