CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0512100

Gene name
Homology with Arabidopsis Similar to At1g68370: ARG1 (ALTERED RESPONSE TO GRAVITY 1) (HF=2e-41)

Module size 31 genes

NF 0.73

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.96 Os01g0512100 9629.m03073 - Altered Response to Gravity (ARG1 protein (AlteredResponse to Gravity) 32591-35072) 2e-41 At1g68370 ARG1 (ALTERED RESPONSE TO GRAVITY 1) O.I. H.G. S.X.
0.88 96.8 0.97 Os04g0196800 9632.m01077 - - 2e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.88 96.8 0.97 Os06g0277200 9634.m01670 - - 7e-1 At4g08260 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.87 96.6 0.97 Os12g0584500 9640.m03852 - - 3e+1 At5g28730 unknown protein O.I. H.G. S.X.
0.85 96.1 0.98 Os02g0491800 9630.m02768 - Germin-like protein 3 (Fragment) 6e-6 At3g04200 germin-like protein, putative O.I. H.G. S.X.
0.82 95.0 0.97 Os02g0159300 9630.m00575 - - 7e-9 At1g15270 - O.I. H.G. S.X.
0.82 95.0 0.97 Os03g0402233 9631.m02813 - - 1e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.81 94.8 0.96 Os09g0348600 9637.m01534 - Protein kinase domain containing protein 3e-4 At2g30740 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.78 93.4 0.97 Os04g0124100 9632.m00250 - - 1e+0 At3g46890 - O.I. H.G. S.X.
0.78 93.4 0.97 Os02g0237200 9630.m01320 - - 6e+0 At3g11745 unknown protein O.I. H.G. S.X.
0.77 93.1 0.97 Os01g0270500 NM_188049.1 - - 5e-1 At1g06540 unknown protein O.I. H.G. S.X.
0.77 93.1 0.97 Os08g0526201 9636.m04208 - - 8e-1 At2g17710 unknown protein O.I. H.G. S.X.
0.76 92.2 0.96 Os01g0156800 9629.m00565 - - 1e+0 At5g58650 PSY1 (plant peptide containing sulfated tyrosine 1) O.I. H.G. S.X.
0.76 92.2 0.97 Os02g0473100 9630.m02594 - - 7e-2 At2g01630 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative O.I. H.G. S.X.
0.74 91.4 0.96 Os09g0291900 9639.m04320 - - 1e+0 At1g07645 ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN) O.I. H.G. S.X.
0.74 91.4 0.96 Os06g0662750 9634.m04385 - - 4e+0 At4g03410 peroxisomal membrane protein-related O.I. H.G. S.X.
0.74 91.4 0.97 Os06g0287400 9634.m01782 - - 8e-1 At1g77710 - O.I. H.G. S.X.
0.71 89.6 0.96 Os07g0253900 9635.m01494 - - 1e-3 At3g50550 unknown protein O.I. H.G. S.X.
0.71 89.6 0.97 Os05g0317800 9633.m02282 - - 2e-2 At3g30775 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) O.I. H.G. S.X.
0.71 89.6 0.97 Os12g0226600 9640.m01205 - - 7e+0 At5g39190 GER2 (GERMIN-LIKE PROTEIN 2) O.I. H.G. S.X.
0.69 87.9 0.96 Os03g0368500 9631.m02476 - - 1e+1 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.67 87.2 0.97 Os08g0226000 9636.m01275 - - 2e+0 At5g56550 OXS3 (OXIDATIVE STRESS 3) O.I. H.G. S.X.
0.66 83.9 0.97 Os04g0552900 9632.m04500 - - 3e-1 At4g30410 transcription factor O.I. H.G. S.X.
0.65 83.8 0.96 Os04g0333600 9632.m02504 - - 8e-1 At3g03826 unknown protein O.I. H.G. S.X.
0.65 83.8 0.96 Os06g0517650 9634.m03051 - - 2e+0 At5g43650 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.63 82.7 0.97 Os11g0162500 9633.m00870 - - 2e-2 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.62 81.5 0.96 Os07g0644900 9635.m04525 - Conserved hypothetical protein 4e-1 At3g16565 ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.57 77.0 0.96 Os08g0376100 AK108088.1 - Conserved hypothetical protein 7e+0 At5g61412 unknown protein O.I. H.G. S.X.
0.53 71.3 0.97 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.52 69.6 0.97 Os11g0269700 AK071998.1 - Conserved hypothetical protein 2e+0 At2g47670 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.47 62.3 0.97 Os03g0803200 AK111283.1 - Conserved hypothetical protein 2e-3 At3g28455 CLE25 (CLAVATA3/ESR-RELATED 25) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	95.8	0.96	Os01g0512100	9629.m03073	-	Altered Response to Gravity (ARG1 protein (AlteredResponse to Gravity) 32591-35072)	2e-41	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.
0.88	96.8	0.97	Os04g0196800	9632.m01077	-	-	2e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.
0.88	96.8	0.97	Os06g0277200	9634.m01670	-	-	7e-1	At4g08260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.87	96.6	0.97	Os12g0584500	9640.m03852	-	-	3e+1	At5g28730	unknown protein	O.I.	H.G.	S.X.
0.85	96.1	0.98	Os02g0491800	9630.m02768	-	Germin-like protein 3 (Fragment)	6e-6	At3g04200	germin-like protein, putative	O.I.	H.G.	S.X.
0.82	95.0	0.97	Os02g0159300	9630.m00575	-	-	7e-9	At1g15270	-	O.I.	H.G.	S.X.
0.82	95.0	0.97	Os03g0402233	9631.m02813	-	-	1e-1	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.81	94.8	0.96	Os09g0348600	9637.m01534	-	Protein kinase domain containing protein	3e-4	At2g30740	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.78	93.4	0.97	Os04g0124100	9632.m00250	-	-	1e+0	At3g46890	-	O.I.	H.G.	S.X.
0.78	93.4	0.97	Os02g0237200	9630.m01320	-	-	6e+0	At3g11745	unknown protein	O.I.	H.G.	S.X.
0.77	93.1	0.97	Os01g0270500	NM_188049.1	-	-	5e-1	At1g06540	unknown protein	O.I.	H.G.	S.X.
0.77	93.1	0.97	Os08g0526201	9636.m04208	-	-	8e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.
0.76	92.2	0.96	Os01g0156800	9629.m00565	-	-	1e+0	At5g58650	PSY1 (plant peptide containing sulfated tyrosine 1)	O.I.	H.G.	S.X.
0.76	92.2	0.97	Os02g0473100	9630.m02594	-	-	7e-2	At2g01630	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	O.I.	H.G.	S.X.
0.74	91.4	0.96	Os09g0291900	9639.m04320	-	-	1e+0	At1g07645	ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN)	O.I.	H.G.	S.X.
0.74	91.4	0.96	Os06g0662750	9634.m04385	-	-	4e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.
0.74	91.4	0.97	Os06g0287400	9634.m01782	-	-	8e-1	At1g77710	-	O.I.	H.G.	S.X.
0.71	89.6	0.96	Os07g0253900	9635.m01494	-	-	1e-3	At3g50550	unknown protein	O.I.	H.G.	S.X.
0.71	89.6	0.97	Os05g0317800	9633.m02282	-	-	2e-2	At3g30775	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	O.I.	H.G.	S.X.
0.71	89.6	0.97	Os12g0226600	9640.m01205	-	-	7e+0	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.69	87.9	0.96	Os03g0368500	9631.m02476	-	-	1e+1	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os08g0226000	9636.m01275	-	-	2e+0	At5g56550	OXS3 (OXIDATIVE STRESS 3)	O.I.	H.G.	S.X.
0.66	83.9	0.97	Os04g0552900	9632.m04500	-	-	3e-1	At4g30410	transcription factor	O.I.	H.G.	S.X.
0.65	83.8	0.96	Os04g0333600	9632.m02504	-	-	8e-1	At3g03826	unknown protein	O.I.	H.G.	S.X.
0.65	83.8	0.96	Os06g0517650	9634.m03051	-	-	2e+0	At5g43650	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.63	82.7	0.97	Os11g0162500	9633.m00870	-	-	2e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.62	81.5	0.96	Os07g0644900	9635.m04525	-	Conserved hypothetical protein	4e-1	At3g16565	ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.57	77.0	0.96	Os08g0376100	AK108088.1	-	Conserved hypothetical protein	7e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	0.97	Os05g0576850	9633.m04714	-	-	1e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.
0.52	69.6	0.97	Os11g0269700	AK071998.1	-	Conserved hypothetical protein	2e+0	At2g47670	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.47	62.3	0.97	Os03g0803200	AK111283.1	-	Conserved hypothetical protein	2e-3	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.5 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.0 99.5 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
17.0 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
26.5	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
26.0	99.5	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
17.0	98.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.2	98.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.7	98.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9	98.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os01g0512100
Gene name
Homology with Arabidopsis	Similar to At1g68370: ARG1 (ALTERED RESPONSE TO GRAVITY 1) (HF=2e-41)
Module size	31 genes
NF	0.73
%ile	94.8

Co-expression analysis

Gene ID Os01g0512100 Gene name Homology with ArabidopsisSimilar to At1g68370: ARG1 (ALTERED RESPONSE TO GRAVITY 1) (HF=2e-41) Module size 31 genes NF 0.73 %ile 94.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0512100

Gene name
Homology with Arabidopsis Similar to At1g68370: ARG1 (ALTERED RESPONSE TO GRAVITY 1) (HF=2e-41)

Module size 31 genes

NF 0.73

%ile 94.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays