CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0508500

Gene name
Homology with Arabidopsis Similar to At1g10140: - (HF=9e-2)

Module size 10 genes

NF 0.33

%ile 37.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 83.4 0.79 Os01g0508500 AK120501.1 - Hypothetical protein 9e-2 At1g10140 - O.I. H.G. S.X.
0.42 53.9 0.91 Os04g0454200 AK072059.1 - Monosaccharide transporter 1 6e-2 At1g34580 monosaccharide transporter, putative O.I. H.G. S.X.
0.38 46.9 0.90 Os02g0646500 AF148877.1 - Aldehyde dehydrogenase domain containing protein 4e+0 At5g01830 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.35 41.7 0.86 Os01g0842400 AK068901.1 - Laccase (EC 1.10.3.2) 7e-5 At2g38080 IRX12 (IRREGULAR XYLEM 12) O.I. H.G. S.X.
0.35 41.7 0.89 Os02g0590400 AK099196.1 - Lecithin:cholesterol acyltransferase familyprotein 9e-1 At5g63480 unknown protein O.I. H.G. S.X.
0.33 38.8 0.91 Os04g0101400 AK100972.1 - Cytochrome P450 family protein 1e-2 At5g06900 CYP93D1 O.I. H.G. S.X.
0.30 32.7 0.89 Os04g0305700 AK068128.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At2g43010 PIF4 (phytochrome interacting factor 4) O.I. H.G. S.X.
0.21 17.9 0.88 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) O.I. H.G. S.X.
0.19 15.1 0.89 Os04g0505000 AK060812.1 - Plant protein of unknown function DUF869 familyprotein 9e-2 At4g21500 unknown protein O.I. H.G. S.X.
0.15 10.3 0.83 Os06g0314600 AK067321.1 - Floral nectary-specific protein 2e-1 At1g15125 S-adenosylmethionine-dependent methyltransferase/ methyltransferase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.1 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.0 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.057 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.
0.041 1 GO:0006629 The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
0.020 1 GO:0006310 Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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