Co-expression analysis

Gene ID Os01g0501700
Gene name
Homology with ArabidopsisSimilar to At2g01110: APG2 (ALBINO AND PALE GREEN 2) (HF=1e-21)
Module size 6 genes
NF 0.73
%ile 95.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.97Os01g0501700AB050885.1-OsTATC protein1e-21At2g01110APG2 (ALBINO AND PALE GREEN 2)O.I.H.G.S.X.
0.8395.80.96Os03g0210700AK099456.1-Hypothetical protein2e+0At1g17480IQD7 (IQ-domain 7)O.I.H.G.S.X.
0.6787.20.95Os03g0695500CB636267-Protein of unknown function DUF1517 family protein1e+0At1g54520unknown proteinO.I.H.G.S.X.
0.6787.20.95Os03g0322600AK067222.1-Hypothetical protein4e-2At5g22340unknown proteinO.I.H.G.S.X.
0.6787.20.95Os09g0530000AK062568.1-Rhodanese-like domain containing protein2e-7At4g27700rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.4458.10.96Os03g0850600AK067191.1-Conserved hypothetical protein6e-1At5g42450pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.498.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.198.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0009688The chemical reactions and pathways resulting in the formation of abscisic acid, 5-(1-hydroxy-2,6,6,trimethyl-4-oxocyclohex-2-en-1-y1)-3-methylpenta-2,4-dienoic acid.Link to AmiGO
0.1821GO:0009306The controlled release of proteins from a cell or group of cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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