CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0496900

Gene name
Homology with Arabidopsis Similar to At3g16200: unknown protein (HF=2e-39)

Module size 8 genes

NF 0.40

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 0.95 Os01g0496900 AK069894.1 - P-type trefoil domain containing protein 2e-39 At3g16200 unknown protein O.I. H.G. S.X.
0.63 82.7 0.95 Os01g0304300 AA753649 - Protein of unknown function DUF616 family protein 1e+1 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.55 73.7 0.95 Os04g0620500 CB667511 - Hypothetical protein 2e-2 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.55 73.7 0.96 Os09g0415800 AK071371.1 - Phosphofructokinase family protein 5e-18 At2g22480 PFK5 (PHOSPHOFRUCTOKINASE 5) O.I. H.G. S.X.
0.40 51.1 0.95 Os09g0537600 AK061004.1 - Cyclophilin B 3e-18 At4g34960 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative O.I. H.G. S.X.
0.28 31.1 0.95 Os07g0283200 AK106663.1 - Conserved hypothetical protein 8e-1 At3g54500 - O.I. H.G. S.X.
0.24 22.4 0.95 Os08g0467400 AK105607.1 - Zinc transporter ZIP family protein 3e-10 At1g68100 IAR1 (IAA-ALANINE RESISTANT 1) O.I. H.G. S.X.
0.21 17.9 0.95 Os03g0253800 AK120111.1 - Hypothetical protein 9e-8 At4g00026 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.2 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.042 1 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
0.027 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
0.024 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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