CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0390700

Gene name
Homology with Arabidopsis Similar to At2g18890: protein kinase family protein (HF=5e+0)

Module size 6 genes

NF 0.65

%ile 87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.99 Os01g0390700 CA761520 - - 5e+0 At2g18890 protein kinase family protein O.I. H.G. S.X.
0.83 95.8 0.99 Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.71 89.6 0.99 Os08g0315200 AK106325.1 - Retrotransposon gag protein family protein 1e+0 At2g27710 60S acidic ribosomal protein P2 (RPP2B) O.I. H.G. S.X.
0.67 87.2 0.99 Os07g0642000 NM_188821.1 - - 9e-4 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.55 73.7 0.99 Os01g0136000 9629.m00355 - 16.9 kDa class I heat shock protein 1e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.40 51.1 0.99 Os12g0509400 AK072889.1 - Polyprotein 3e-1 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os01g0390700	CA761520	-	-	5e+0	At2g18890	protein kinase family protein	O.I.	H.G.	S.X.
0.83	95.8	0.99	Os09g0320000	9637.m01227	-	-	2e-1	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.
0.71	89.6	0.99	Os08g0315200	AK106325.1	-	Retrotransposon gag protein family protein	1e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.
0.67	87.2	0.99	Os07g0642000	NM_188821.1	-	-	9e-4	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os01g0136000	9629.m00355	-	16.9 kDa class I heat shock protein	1e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os12g0509400	AK072889.1	-	Polyprotein	3e-1	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.9 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1 99.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
42.3	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.9	99.4	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.1	99.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.6	99.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.1	99.2	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7	99.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1	98.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2	98.8	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.5	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1608772_at, orthologous to the query gene, Os01g0390700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 1608772_at At2g18890 phosphate transporter-like - 4e+0 At4g14315 unknown protein O.I. H.G. S.X.
0.44 64.1 1616030_x_at At2g18890 - - 1e+0 At5g02610 60S ribosomal protein L35 (RPL35D) O.I. H.G. S.X.
0.38 53.6 1620737_at At2g18890 - - 2e+0 At4g36170 unknown protein O.I. H.G. S.X.
0.35 48.5 1619350_at At2g18890 - - 5e+0 At5g06430 thioredoxin-related O.I. H.G. S.X.
0.34 46.8 1608221_at At2g18890 - - 4e+0 At5g39330 unknown protein O.I. H.G. S.X.
0.34 46.8 1618508_at At2g18890 hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529 - 4e+0 At2g18876 unknown protein O.I. H.G. S.X.
0.31 41.3 1618860_at At2g18890 hypothetical LOC100241485 /// hypothetical protein LOC100252358 /// hypothetical protein LOC100257255 /// hypothetical protein LOC100260526 - 2e+0 At3g61360 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.31 41.3 1607820_at At2g18890 - - 6e+0 At3g47836 unknown protein O.I. H.G. S.X.
0.29 37.7 1610660_at At2g18890 hypothetical LOC100263492 - 1e+0 At2g20700 unknown protein O.I. H.G. S.X.
0.28 37.7 1621125_at At2g18890 hypothetical protein LOC100250030 - 2e-4 At1g67260 TCP1 O.I. H.G. S.X.
0.26 32.0 1614830_at At2g18890 hypothetical protein LOC100253816 - 6e-2 At4g32870 unknown protein O.I. H.G. S.X.
0.26 32.0 1616250_at At2g18890 hypothetical protein LOC100243555 - 9e-18 At3g03890 FMN binding O.I. H.G. S.X.
0.26 32.0 1621590_at At2g18890 - - 9e-2 At1g10140 - O.I. H.G. S.X.
0.26 32.0 1619805_at At2g18890 similar to leucine-rich repeat protein-related - 4e-9 At1g25570 leucine-rich repeat protein-related O.I. H.G. S.X.
0.24 28.7 1617782_at At2g18890 - - 3e-1 At1g66560 WRKY64 O.I. H.G. S.X.
0.24 28.7 1610257_at At2g18890 - - 1e-6 At3g25660 glutamyl-tRNA(Gln) amidotransferase, putative O.I. H.G. S.X.
0.24 28.7 1607656_at At2g18890 hypothetical protein LOC100252782 - 2e+0 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) O.I. H.G. S.X.
0.24 28.7 1611782_at At2g18890 - - 4e+0 At5g05113 unknown protein O.I. H.G. S.X.
0.23 27.5 1611079_at At2g18890 - - 7e-3 At1g06790 RNA polymerase Rpb7 N-terminal domain-containing protein O.I. H.G. S.X.
0.23 27.5 1609246_s_at At2g18890 hypothetical protein LOC100252664 - 6e+0 At5g48657 defense protein-related O.I. H.G. S.X.
0.22 25.6 1614399_at At2g18890 hypothetical protein LOC100252418 - 9e-2 At3g59730 receptor lectin kinase, putative O.I. H.G. S.X.
0.22 25.6 1613558_at At2g18890 - - 3e+0 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) O.I. H.G. S.X.
0.22 25.6 1613714_at At2g18890 - - 8e-1 At3g09160 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.21 24.0 1610543_at At2g18890 - - 8e+0 At4g35280 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.21 24.0 1606749_s_at At2g18890 hypothetical protein LOC100245228 - 2e-22 At5g54290 cytochrome c biogenesis protein family O.I. H.G. S.X.
0.20 22.4 1614519_at At2g18890 hypothetical protein LOC100243614 - 4e-6 At5g44230 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.20 22.4 1612115_at At2g18890 hypothetical protein LOC100261391 - 2e-8 At3g09970 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.19 20.9 1619939_at At2g18890 - - 2e+1 At5g43430 ETFBETA O.I. H.G. S.X.
0.19 20.9 1617367_x_at At2g18890 - - 6e+0 At5g38860 BIM3 (BES1-interacting Myc-like protein 3) O.I. H.G. S.X.
0.18 19.4 1612474_at At2g18890 - - 1e+0 At3g02120 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.18 19.4 1619346_at At2g18890 hypothetical protein LOC100255325 - 3e-4 At3g44750 HDA3 (HISTONE DEACETYLASE 3) O.I. H.G. S.X.
0.18 19.4 1610347_s_at At2g18890 similar to NADH dehydrogenase subunit I - 2e+0 At1g35430 unknown protein O.I. H.G. S.X.
0.18 19.4 1617944_at At2g18890 - - 6e+0 At5g59760 unknown protein O.I. H.G. S.X.
0.17 18.2 1607185_at At2g18890 - - 4e-3 At1g20696 HMGB3 (HIGH MOBILITY GROUP B 3) O.I. H.G. S.X.
0.17 18.2 1609005_at At2g18890 hypothetical LOC100246376 - 3e-1 At3g13782 NAP1 O.I. H.G. S.X.
0.17 18.2 1616239_at At2g18890 hypothetical protein LOC100262073 - 2e-6 At5g60900 RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1) O.I. H.G. S.X.
0.17 18.2 1621978_at At2g18890 - - 3e-23 At3g20362 unknown protein O.I. H.G. S.X.
0.14 14.4 1610223_at At2g18890 - - 4e-10 At1g04290 thioesterase family protein O.I. H.G. S.X.
0.14 14.4 1618445_s_at At2g18890 hypothetical LOC100241485 /// hypothetical protein LOC100252358 /// hypothetical protein LOC100257255 /// hypothetical protein LOC100260526 - 4e-1 At2g23450 protein kinase family protein O.I. H.G. S.X.
0.13 13.3 1615309_at At2g18890 - - 4e-6 At1g19397 unknown protein O.I. H.G. S.X.
0.13 13.3 1617552_at At2g18890 hypothetical protein LOC100243817 - 4e-35 At4g35020 ARAC3 (ARABIDOPSIS RAC-LIKE 3) O.I. H.G. S.X.
0.12 12.1 1606560_at At2g18890 - - 3e+0 At5g12360 unknown protein O.I. H.G. S.X.
0.11 11.3 1614675_at At2g18890 hypothetical protein LOC100244936 - 2e-1 At1g68010 HPR O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	1608772_at	At2g18890	phosphate transporter-like	-	4e+0	At4g14315	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	1616030_x_at	At2g18890	-	-	1e+0	At5g02610	60S ribosomal protein L35 (RPL35D)	O.I.	H.G.	S.X.
0.38	53.6	1620737_at	At2g18890	-	-	2e+0	At4g36170	unknown protein	O.I.	H.G.	S.X.
0.35	48.5	1619350_at	At2g18890	-	-	5e+0	At5g06430	thioredoxin-related	O.I.	H.G.	S.X.
0.34	46.8	1608221_at	At2g18890	-	-	4e+0	At5g39330	unknown protein	O.I.	H.G.	S.X.
0.34	46.8	1618508_at	At2g18890	hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529	-	4e+0	At2g18876	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	1618860_at	At2g18890	hypothetical LOC100241485 /// hypothetical protein LOC100252358 /// hypothetical protein LOC100257255 /// hypothetical protein LOC100260526	-	2e+0	At3g61360	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.31	41.3	1607820_at	At2g18890	-	-	6e+0	At3g47836	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	1610660_at	At2g18890	hypothetical LOC100263492	-	1e+0	At2g20700	unknown protein	O.I.	H.G.	S.X.
0.28	37.7	1621125_at	At2g18890	hypothetical protein LOC100250030	-	2e-4	At1g67260	TCP1	O.I.	H.G.	S.X.
0.26	32.0	1614830_at	At2g18890	hypothetical protein LOC100253816	-	6e-2	At4g32870	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	1616250_at	At2g18890	hypothetical protein LOC100243555	-	9e-18	At3g03890	FMN binding	O.I.	H.G.	S.X.
0.26	32.0	1621590_at	At2g18890	-	-	9e-2	At1g10140	-	O.I.	H.G.	S.X.
0.26	32.0	1619805_at	At2g18890	similar to leucine-rich repeat protein-related	-	4e-9	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.
0.24	28.7	1617782_at	At2g18890	-	-	3e-1	At1g66560	WRKY64	O.I.	H.G.	S.X.
0.24	28.7	1610257_at	At2g18890	-	-	1e-6	At3g25660	glutamyl-tRNA(Gln) amidotransferase, putative	O.I.	H.G.	S.X.
0.24	28.7	1607656_at	At2g18890	hypothetical protein LOC100252782	-	2e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.
0.24	28.7	1611782_at	At2g18890	-	-	4e+0	At5g05113	unknown protein	O.I.	H.G.	S.X.
0.23	27.5	1611079_at	At2g18890	-	-	7e-3	At1g06790	RNA polymerase Rpb7 N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.23	27.5	1609246_s_at	At2g18890	hypothetical protein LOC100252664	-	6e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.
0.22	25.6	1614399_at	At2g18890	hypothetical protein LOC100252418	-	9e-2	At3g59730	receptor lectin kinase, putative	O.I.	H.G.	S.X.
0.22	25.6	1613558_at	At2g18890	-	-	3e+0	At5g52210	ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.22	25.6	1613714_at	At2g18890	-	-	8e-1	At3g09160	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.21	24.0	1610543_at	At2g18890	-	-	8e+0	At4g35280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.21	24.0	1606749_s_at	At2g18890	hypothetical protein LOC100245228	-	2e-22	At5g54290	cytochrome c biogenesis protein family	O.I.	H.G.	S.X.
0.20	22.4	1614519_at	At2g18890	hypothetical protein LOC100243614	-	4e-6	At5g44230	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.20	22.4	1612115_at	At2g18890	hypothetical protein LOC100261391	-	2e-8	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.19	20.9	1619939_at	At2g18890	-	-	2e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.
0.19	20.9	1617367_x_at	At2g18890	-	-	6e+0	At5g38860	BIM3 (BES1-interacting Myc-like protein 3)	O.I.	H.G.	S.X.
0.18	19.4	1612474_at	At2g18890	-	-	1e+0	At3g02120	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.18	19.4	1619346_at	At2g18890	hypothetical protein LOC100255325	-	3e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.
0.18	19.4	1610347_s_at	At2g18890	similar to NADH dehydrogenase subunit I	-	2e+0	At1g35430	unknown protein	O.I.	H.G.	S.X.
0.18	19.4	1617944_at	At2g18890	-	-	6e+0	At5g59760	unknown protein	O.I.	H.G.	S.X.
0.17	18.2	1607185_at	At2g18890	-	-	4e-3	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	O.I.	H.G.	S.X.
0.17	18.2	1609005_at	At2g18890	hypothetical LOC100246376	-	3e-1	At3g13782	NAP1	O.I.	H.G.	S.X.
0.17	18.2	1616239_at	At2g18890	hypothetical protein LOC100262073	-	2e-6	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	O.I.	H.G.	S.X.
0.17	18.2	1621978_at	At2g18890	-	-	3e-23	At3g20362	unknown protein	O.I.	H.G.	S.X.
0.14	14.4	1610223_at	At2g18890	-	-	4e-10	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.
0.14	14.4	1618445_s_at	At2g18890	hypothetical LOC100241485 /// hypothetical protein LOC100252358 /// hypothetical protein LOC100257255 /// hypothetical protein LOC100260526	-	4e-1	At2g23450	protein kinase family protein	O.I.	H.G.	S.X.
0.13	13.3	1615309_at	At2g18890	-	-	4e-6	At1g19397	unknown protein	O.I.	H.G.	S.X.
0.13	13.3	1617552_at	At2g18890	hypothetical protein LOC100243817	-	4e-35	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	O.I.	H.G.	S.X.
0.12	12.1	1606560_at	At2g18890	-	-	3e+0	At5g12360	unknown protein	O.I.	H.G.	S.X.
0.11	11.3	1614675_at	At2g18890	hypothetical protein LOC100244936	-	2e-1	At1g68010	HPR	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Os01g0390700
Gene name
Homology with Arabidopsis	Similar to At2g18890: protein kinase family protein (HF=5e+0)
Module size	6 genes
NF	0.65
%ile	87.4

Co-expression analysis

Gene ID Os01g0390700 Gene name Homology with ArabidopsisSimilar to At2g18890: protein kinase family protein (HF=5e+0) Module size 6 genes NF 0.65 %ile 87.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Os01g0390700

Gene name
Homology with Arabidopsis Similar to At2g18890: protein kinase family protein (HF=5e+0)

Module size 6 genes

NF 0.65

%ile 87.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays