CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0383700

Gene name
Homology with Arabidopsis Similar to At4g03020: transducin family protein / WD-40 repeat family protein (HF=4e-6)

Module size 6 genes

NF 0.22

%ile 20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 0.88 Os01g0383700 NM_193939.1 - Peptidase S9A, prolyl oligopeptidase, N-terminalbeta-propeller domain containing protein 4e-6 At4g03020 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.44 58.1 0.94 Os03g0784500 AK108472.1 - Hypothetical protein 1e-1 At5g53310 myosin heavy chain-related O.I. H.G. S.X.
0.21 17.9 0.90 Os05g0495300 AK120489.1 - - 2e-1 At1g48380 RHL1 (ROOT HAIRLESS 1) O.I. H.G. S.X.
0.21 17.9 0.90 Os09g0413600 AK107000.1 - Rho GTPase activation protein domain containingprotein 1e+0 At1g30260 - O.I. H.G. S.X.
0.21 17.9 0.90 Os03g0128100 AK105008.2 - Glycosyl transferase, family 48 protein 3e-35 At5g13000 ATGSL12 (glucan synthase-like 12) O.I. H.G. S.X.
0.08 4.2 0.89 Os01g0919600 AK066408.1 - Conserved hypothetical protein 7e-2 At1g24570 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.1 96.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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