CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0355200

Gene name
Homology with Arabidopsis Similar to At3g14480: glycine/proline-rich protein (HF=4e+0)

Module size 6 genes

NF 0.63

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0355200 NM_193968.1 - - 4e+0 At3g14480 glycine/proline-rich protein O.I. H.G. S.X.
0.67 87.2 0.98 Os11g0138800 9639.m00346 - - 2e-1 At3g16420 PBP1 (PYK10-BINDING PROTEIN 1) O.I. H.G. S.X.
0.67 87.2 0.98 Os02g0517000 9630.m02995 - - 3e-2 At1g13690 ATE1 O.I. H.G. S.X.
0.63 82.7 0.98 Os08g0247950 9636.m01500 - - 7e-1 At1g50800 unknown protein O.I. H.G. S.X.
0.57 77.0 0.98 Os12g0520000 9640.m03243 - - 3e-1 At2g16890 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.35 41.7 0.98 Os12g0505200 9640.m03094 - - 3e-1 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
101.9 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
55.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.7 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.6 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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