CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0353900

Gene name
Homology with Arabidopsis Similar to At1g28540: unknown protein (HF=2e-2)

Module size 18 genes

NF 0.30

%ile 31.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.92 Os01g0353900 AK063501.1 - Hypothetical protein 2e-2 At1g28540 unknown protein O.I. H.G. S.X.
0.58 77.0 0.93 Os01g0278200 AK071473.1 - RAN binding protein 16-like 3e+0 At4g24660 ATHB22 (HOMEOBOX PROTEIN 22) O.I. H.G. S.X.
0.39 48.3 0.93 Os06g0213200 9634.m01074 - The start codon is not identified. 3e-11 At4g33350 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.38 46.9 0.96 Os04g0643700 AK108565.1 - TPR-like domain containing protein 9e-2 At2g17440 leucine-rich repeat family protein O.I. H.G. S.X.
0.35 41.7 0.93 Os05g0220900 AK109172.1 - Conserved hypothetical protein 5e-2 At1g07135 glycine-rich protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0193500 NM_188210.1 - Conserved hypothetical protein 7e-1 At2g23080 casein kinase II alpha chain, putative O.I. H.G. S.X.
0.35 41.7 0.96 Os02g0453800 AK069657.1 - Hypothetical protein 2e+0 At3g54170 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) O.I. H.G. S.X.
0.31 34.5 0.96 Os11g0429100 BI813405 - Disease resistance protein family protein 3e-1 At1g53815 F-box family protein O.I. H.G. S.X.
0.30 32.7 0.92 Os03g0220400 AK061070.1 - Hypothetical protein 6e-2 At1g61160 - O.I. H.G. S.X.
0.28 31.1 0.95 Os01g0797900 AK070899.1 - Conserved hypothetical protein 2e+0 At3g11030 unknown protein O.I. H.G. S.X.
0.26 25.6 0.94 Os04g0503100 AK064722.1 - Hypothetical protein 2e-1 At4g28485 unknown protein O.I. H.G. S.X.
0.26 25.6 0.95 Os05g0126700 AK067404.1 - Conserved hypothetical protein 1e-1 At4g03565 - O.I. H.G. S.X.
0.22 19.4 0.96 Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.96 Os07g0300200 CA762475 - Protein prenyltransferase domain containingprotein 2e+0 At3g03620 MATE efflux family protein O.I. H.G. S.X.
0.20 16.5 0.93 Os07g0264000 AK111419.1 - Hypothetical protein 3e-2 At5g38540 jacalin lectin family protein O.I. H.G. S.X.
0.16 11.3 0.95 Os07g0564000 BI805536 - Conserved hypothetical protein 9e-1 At4g02370 unknown protein O.I. H.G. S.X.
0.14 9.3 0.96 Os03g0849700 AK111868.1 - TPR-like domain containing protein 1e-1 At4g02750 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.10 5.7 0.94 Os03g0789500 AK059333.1 - Hypothetical protein 6e-1 At4g10740 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.5 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.061 1 GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
0.043 1 GO:0006813 The directed movement of potassium ions (K+) into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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