CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0343500

Gene name
Homology with Arabidopsis Similar to At3g05625: binding (HF=9e-10)

Module size 13 genes

NF 0.56

%ile 74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.89 Os01g0343500 AK071988.1 - TPR repeat containing protein 9e-10 At3g05625 binding O.I. H.G. S.X.
0.67 87.2 0.91 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.64 83.4 0.94 Os01g0558800 AK068120.1 - Conserved hypothetical protein 8e-1 At5g19300 - O.I. H.G. S.X.
0.55 73.7 0.95 Os08g0345400 AK065348.1 - Conserved hypothetical protein 1e-2 At2g04360 unknown protein O.I. H.G. S.X.
0.53 71.3 0.92 Os01g0142100 AK065031.1 - Peptidase M50 family protein 1e-6 At5g05740 EGY2 O.I. H.G. S.X.
0.50 68.0 0.91 Os11g0544000 AK066017.1 - - 7e-2 At1g19990 unknown protein O.I. H.G. S.X.
0.50 68.0 0.93 Os12g0233300 AK058317.1 - Histidine triad (HIT) protein family protein 2e+0 At1g07700 thioredoxin family protein O.I. H.G. S.X.
0.49 64.4 0.92 Os02g0751600 AK072946.1 - Peptidylprolyl isomerase, FKBP-type domaincontaining protein 4e-2 At5g03030 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.48 63.7 0.93 Os03g0271100 AB095095.1 - Sigma factor SIG2B 4e-3 At1g08540 SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2) O.I. H.G. S.X.
0.46 60.9 0.95 Os01g0618400 NM_192814.1 - RNA helicase (Fragment) 2e-20 At5g63630 DEAD box RNA helicase, putative O.I. H.G. S.X.
0.44 58.1 0.94 Os01g0705300 AK102719.1 - Conserved hypothetical protein 1e-1 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein O.I. H.G. S.X.
0.42 53.9 0.94 Os03g0736400 AK105812.1 - Conserved hypothetical protein 95 family protein 1e-24 At3g28460 unknown protein O.I. H.G. S.X.
0.42 53.9 0.94 Os11g0153700 AK058576.1 - Signal recognition particle 54 kDa protein,chloroplast precursor (SRP54) (54 chloroplast protein)(54CP) (FFC) 2e-35 At5g03940 CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.3 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0006352 Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
0.022 1 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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