CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0306800

Gene name
Homology with Arabidopsis Similar to At5g42370: unknown protein (HF=9e-1)

Module size 6 genes

NF 0.50

%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.94 Os01g0306800 AK099426.1 - Conserved hypothetical protein 9e-1 At5g42370 unknown protein O.I. H.G. S.X.
0.73 91.1 0.93 Os01g0829000 AK065327.1 - Conserved hypothetical protein 7e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.50 68.0 0.95 Os07g0510100 AK066776.1 - Methionine aminopeptidase-like protein 3e-19 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.42 53.9 0.93 Os10g0512500 AK067203.1 - Protein of unknown function UPF0044 family protein 1e+0 At1g18210 calcium-binding protein, putative O.I. H.G. S.X.
0.38 46.9 0.94 Os05g0566300 AK099641.1 - RimM protein domain containing protein 7e-3 At5g46420 16S rRNA processing protein RimM family O.I. H.G. S.X.
0.26 25.6 0.94 Os05g0587200 AK066321.1 - Conserved hypothetical protein 6e+0 At2g36026 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.5 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.3 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0042254 The process of the formation of the constituents of the ribosome subunits, their assembly, and their transport to the sites of protein synthesis.
0.182 1 GO:0006364 Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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