CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0301700

Gene name
Homology with Arabidopsis Similar to At5g02780: In2-1 protein, putative (HF=5e+0)

Module size 6 genes

NF 0.66

%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.99 Os01g0301700 AK100563.1 - TPR-like domain containing protein 5e+0 At5g02780 In2-1 protein, putative O.I. H.G. S.X.
0.91 98.9 0.98 Os02g0155300 AK067517.1 - Conserved hypothetical protein 4e-1 At3g03180 Got1-like family protein O.I. H.G. S.X.
0.73 91.1 0.99 Os12g0198500 9640.m00905 - Hypothetical protein 2e+0 At5g66658 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os06g0148700 AK064526.1 - Cyclin-like F-box domain containing protein 7e-1 At1g56060 unknown protein O.I. H.G. S.X.
0.50 68.0 0.99 Os07g0654700 AK073136.1 - - 7e-1 At2g30760 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os03g0386600 AK069441.1 - Conserved hypothetical protein 3e-2 At3g63470 scpl40 (serine carboxypeptidase-like 40) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.0 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.8 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.0 99.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.2 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.0 99.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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