CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0297400

Gene name
Homology with Arabidopsis Similar to At2g47560: zinc finger (C3HC4-type RING finger) family protein (HF=4e+0)

Module size 8 genes

NF 0.19

%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.98 Os01g0297400 NM_189166.1 - - 4e+0 At2g47560 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 31.1 0.99 Os08g0551300 9636.m04455 - Arabidopsis conserved protein family protein 2e-2 At1g80180 unknown protein O.I. H.G. S.X.
0.18 13.7 0.98 Os06g0148300 AK070582.1 - Cyclin-like F-box domain containing protein 9e-1 At3g32180 unknown protein O.I. H.G. S.X.
0.18 13.7 0.99 Os05g0585000 9633.m04783 - - 3e+0 At4g29770 - O.I. H.G. S.X.
0.15 10.3 0.99 Os06g0635500 9634.m04140 - Homeodomain-like containing protein 2e+0 At5g53880 unknown protein O.I. H.G. S.X.
0.13 8.2 0.99 Os12g0108900 9640.m00081 - DNA methyltransferase 2e-1 At5g28610 - O.I. H.G. S.X.
0.13 8.2 0.99 Os02g0189800 9630.m00884 - ABC transporter related domain containing protein 5e-3 At3g28415 P-glycoprotein, putative O.I. H.G. S.X.
0.07 3.7 0.99 Os11g0494900 9639.m02735 - - 2e-1 At3g28250 glycosyl hydrolase family protein 17 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.9 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.1 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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