Co-expression analysis

Gene ID Os01g0294300
Gene name
Homology with ArabidopsisSimilar to At4g36430: peroxidase, putative (HF=2e+0)
Module size 7 genes
NF 0.36
%ile 42.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.60.84Os01g02943009629.m01849--2e+0At4g36430peroxidase, putativeO.I.H.G.S.X.
0.6079.70.84Os04g0674800AK119913.1-Cellulase (Fragment)1e+0At1g02800ATCEL2O.I.H.G.S.X.
0.3541.70.84Os05g01348009633.m00371-Haem peroxidase, plant/fungal/bacterial familyprotein1e-2At3g01190peroxidase 27 (PER27) (P27) (PRXR7)O.I.H.G.S.X.
0.3541.70.85Os09g05642009637.m03335-Peptidase C1A, papain family protein1e-4At1g06260cysteine proteinase, putativeO.I.H.G.S.X.
0.3236.30.84Os06g0169900CB096301-Hypothetical protein5e-1At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.2219.40.85Os02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1O.I.H.G.S.X.
0.2219.40.85Os11g0138900AK059449.1-Esterase/lipase/thioesterase domain containingprotein2e-1At2g05510glycine-rich proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.699.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.098.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.898.1GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.Link to AmiGO
0.0432GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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