CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0293600

Gene name
Homology with Arabidopsis Similar to At4g09660: - (HF=1e+0)

Module size 7 genes

NF 0.50

%ile 66.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.99 Os01g0293600 NM_183632.1 - HAT dimerisation domain containing protein 1e+0 At4g09660 - O.I. H.G. S.X.
0.71 89.6 0.99 Os05g0234700 9632.m01094 - HAT dimerisation domain containing protein 6e-2 At4g09660 - O.I. H.G. S.X.
0.63 82.7 0.99 Os05g0204700 9633.m01017 - - 6e-1 At3g49120 PRXCB (PEROXIDASE CB) O.I. H.G. S.X.
0.61 81.2 0.99 Os11g0427300 9639.m02116 - - 2e+0 At1g33840 unknown protein O.I. H.G. S.X.
0.38 46.9 0.99 Os12g0153700 9640.m00494 - - 2e+0 At5g44540 tapetum-specific protein-related O.I. H.G. S.X.
0.35 41.7 0.99 Os10g0468050 9638.m02879 - - 9e+0 At5g04820 OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13) O.I. H.G. S.X.
0.31 34.5 0.99 Os09g0429000 9637.m02259 - - 6e+0 At5g43520 DC1 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.3 99.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.2 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.9 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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