Co-expression analysis

Gene ID Os01g0290700
Gene name
Homology with ArabidopsisSimilar to At3g62150: PGP21 (P-GLYCOPROTEIN 21) (HF=2e-31)
Module size 6 genes
NF 0.03
%ile 1.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.90Os01g0290700AK058263.1-MDR-like p-glycoprotein2e-31At3g62150PGP21 (P-GLYCOPROTEIN 21)O.I.H.G.S.X.
0.1813.70.94Os05g0494000AK099695.1-Cytochrome P450 98A1 (EC 1.14.-.-)2e-5At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.042.00.91Os03g0246500AK066916.1-Plant protein of unknown function DUF869 familyprotein6e-10At1g47900unknown proteinO.I.H.G.S.X.
0.021.00.90Os01g0799900AK072822.1-Latex-abundant protein9e-4At5g04200AtMC9 (metacaspase 9)O.I.H.G.S.X.
0.021.00.90Os07g0446100NM_187038.1-Zn-finger, RING domain containing protein1e-5At3g23280zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family proteinO.I.H.G.S.X.
0.010.50.90Os06g0133900AB016765.1-5-enolpyruvylshikimate-3-phosphate synthase (EC2.5.1.19) (Fragment)2e-35At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
67.999.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
21.699.2GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
21.199.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.199.1GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.899.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.899.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.699.0GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.198.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.098.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.998.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2001GO:0009423The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.Link to AmiGO
0.2001GO:0033587The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid.Link to AmiGO
0.1331GO:0009073The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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