CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0287600

Gene name
Homology with Arabidopsis Similar to At3g54420: ATEP3 (HF=3e-2)

Module size 8 genes

NF 0.58

%ile 79.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.58 77.0 0.86 Os01g0287600 AK063062.1 - Chitinase (Class II) (EC 3.2.1.14) 3e-2 At3g54420 ATEP3 O.I. H.G. S.X.
0.80 94.6 0.87 Os04g0610900 AK120898.1 - EDR1 9e-5 At4g24480 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.74 91.4 0.86 Os01g0680200 AK121881.1 - - 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.67 87.2 0.89 Os04g0588700 AK099941.1 - ABC transporter, transmembrane region domaincontaining protein 9e-6 At3g59140 ATMRP14 O.I. H.G. S.X.
0.53 71.3 0.89 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.47 62.3 0.88 Os07g0280200 AK108656.1 - AMP-dependent synthetase and ligase domaincontaining protein 2e-2 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein O.I. H.G. S.X.
0.43 55.4 0.89 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.31 34.5 0.88 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
52.3 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.7 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.8 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006779 The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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