CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0284900

Gene name
Homology with Arabidopsis Similar to At2g37000: TCP family transcription factor, putative (HF=8e-1)

Module size 6 genes

NF 0.60

%ile 81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.80 Os01g0284900 AK106618.1 - Conserved hypothetical protein 8e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.83 95.8 0.78 Os05g0206000 AK107740.1 - Hypothetical protein 3e-1 At2g04520 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative O.I. H.G. S.X.
0.60 79.7 0.84 Os06g0147000 AK120978.1 - Conserved hypothetical protein 3e-1 At4g28830 methyltransferase/ nucleic acid binding O.I. H.G. S.X.
0.44 58.1 0.84 Os03g0386000 AK072984.1 - WD domain protein-like 3e-5 At1g78070 - O.I. H.G. S.X.
0.35 41.7 0.80 Os02g0824500 AK111296.1 - - 2e-3 At3g48940 remorin family protein O.I. H.G. S.X.
0.31 34.5 0.81 Os07g0154100 AK119780.1 - The start codon is not identified. 3e-4 At3g14440 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.9 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.7 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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