CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0283100

Gene name
Homology with Arabidopsis Similar to At1g19580: GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) (HF=1e-35)

Module size 6 genes

NF 0.36

%ile 41.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.97 Os01g0283100 AK071713.1 - Ferripyochelin-binding protein-like 1e-35 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.57 77.0 0.96 Os06g0671900 AK069237.1 - Beta-tubulin 0 At5g62690 TUB2 O.I. H.G. S.X.
0.55 73.7 0.97 Os08g0520300 AK069912.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-9 At1g17370 UBP1B (oligouridylate binding protein 1B) O.I. H.G. S.X.
0.50 68.0 0.97 Os09g0375100 CF278729 - Heat shock factor-binding protein 1 7e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.33 38.8 0.97 Os03g0669200 AU030384 - G protein beta subunit 1e+0 At2g05270 unknown protein O.I. H.G. S.X.
0.10 5.7 0.97 Os01g0314300 AK073419.1 - PUA domain containing protein 6e-22 At1g09150 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.071 1 GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.029 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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