Co-expression analysis

Gene ID Os01g0279100
Gene name
Homology with ArabidopsisSimilar to At3g56940: CRD1 (COPPER RESPONSE DEFECT 1) (HF=1e-114)
Module size 6 genes
NF 0.52
%ile 69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.92Os01g0279100AK059435.1-Basic leucine zipper transcription factor CAT103(Fragment)1e-114At3g56940CRD1 (COPPER RESPONSE DEFECT 1)O.I.H.G.S.X.
0.8395.80.96Os12g0271700AK110824.1-Solanesyl diphosphate synthase1e-18At1g17050SPS2 (Solanesyl diphosphate synthase 2)O.I.H.G.S.X.
0.5573.70.96Os11g0621400AK062468.1-Hypothetical protein1e+0At4g34290SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.5573.70.96Os11g0267000AK061014.1-GUN4-like domain containing protein4e-2At3g50550unknown proteinO.I.H.G.S.X.
0.3541.70.96Os04g0657300CB624212-Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)2e-1At1g68552CPuORF53 (Conserved peptide upstream open reading frame 53)O.I.H.G.S.X.
0.3338.80.96Os02g0593500AK067498.1--6e-18At3g26570PHT2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.999.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.399.2GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.698.1GSM35713314-day-old seedling, rep 2GSE14275Expression data for heat shock in rice seedlingsLink to GEO
10.498.1GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.498.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM1952305d-seedGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.497.7GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM240995Zhonghua11 7 DAF, biological replicate 2GSE9498Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0008299The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage