CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0278900

Gene name
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-7)

Module size 6 genes

NF 0.79

%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0678600 AK120629.1 - Ribosomal protein S20 family protein 1e-1 At4g30460 glycine-rich protein O.I. H.G. S.X.
0.73 91.1 0.98 Os02g0822600 AK060728.1 - 50S ribosomal protein L9, chloroplast precursor(CL13) 2e+0 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0219900 AK066527.1 - 50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment) 5e-1 At3g25920 RPL15 O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0749200 AK104146.1 - 50S ribosomal protein L13 1e-20 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.63 82.7 0.97 Os03g0843400 AK061198.1 - 30S ribosomal protein S6, chloroplast precursor(Fragment) 3e-2 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.3 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig6817_at, orthologous to the query gene, Os01g0278900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 86.0 Contig6817_at At3g56910 - - 2e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.31 38.6 Contig6124_at At3g56910 - - 5e-2 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.29 35.5 Contig7088_at At3g56910 alpha-amylase type A, EC 3.2.1.1 - 5e-2 At4g25000 AMY1 (ALPHA-AMYLASE-LIKE) O.I. H.G. S.X.
0.25 28.9 HVSMEl0008B06r2_at At3g56910 - - 4e+0 At1g53635 unknown protein O.I. H.G. S.X.
0.25 28.9 Contig11659_at At3g56910 - - 5e-2 At5g32440 - O.I. H.G. S.X.
0.23 26.1 Contig11797_at At3g56910 - - 1e+1 At4g21216 unknown protein O.I. H.G. S.X.
0.20 21.1 Contig15882_s_at At3g56910 - - 3e-1 At5g07220 ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3) O.I. H.G. S.X.
0.17 16.9 Contig12507_at At3g56910 - - 2e-4 At3g01930 nodulin family protein O.I. H.G. S.X.
0.11 9.4 Contig397_x_at At3g56910 - - 0 At1g07920 elongation factor 1-alpha / EF-1-alpha O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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