CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0278900

Gene name
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-7)

Module size 6 genes

NF 0.79

%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0278900 AK120429.1 - Hypothetical protein 3e-7 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.83 95.8 0.98 Os01g0678600 AK120629.1 - Ribosomal protein S20 family protein 1e-1 At4g30460 glycine-rich protein O.I. H.G. S.X.
0.73 91.1 0.98 Os02g0822600 AK060728.1 - 50S ribosomal protein L9, chloroplast precursor(CL13) 2e+0 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0219900 AK066527.1 - 50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment) 5e-1 At3g25920 RPL15 O.I. H.G. S.X.
0.67 87.2 0.98 Os01g0749200 AK104146.1 - 50S ribosomal protein L13 1e-20 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.63 82.7 0.97 Os03g0843400 AK061198.1 - 30S ribosomal protein S6, chloroplast precursor(Fragment) 3e-2 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.98	Os01g0278900	AK120429.1	-	Hypothetical protein	3e-7	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.
0.83	95.8	0.98	Os01g0678600	AK120629.1	-	Ribosomal protein S20 family protein	1e-1	At4g30460	glycine-rich protein	O.I.	H.G.	S.X.
0.73	91.1	0.98	Os02g0822600	AK060728.1	-	50S ribosomal protein L9, chloroplast precursor(CL13)	2e+0	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os03g0219900	AK066527.1	-	50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment)	5e-1	At3g25920	RPL15	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os01g0749200	AK104146.1	-	50S ribosomal protein L13	1e-20	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.
0.63	82.7	0.97	Os03g0843400	AK061198.1	-	30S ribosomal protein S6, chloroplast precursor(Fragment)	3e-2	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.2 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.3 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.3 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.2	97.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.3	97.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0	97.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3	97.2	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.3	97.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1	97.1	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0	97.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7	96.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.15777.1.A1_at, orthologous to the query gene, Os01g0278900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 Gma.15777.1.A1_at At3g56910 - - 1e-9 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.77 90.3 Gma.8261.1.A1_s_at At3g56910 - - 1e-1 At5g14910 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.76 89.7 Gma.7200.1.S1_at At3g56910 - - 6e-32 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) O.I. H.G. S.X.
0.74 89.2 Gma.10595.1.S1_at At3g56910 - - 2e-40 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.
0.74 89.2 Gma.13001.2.S1_a_at At3g56910 - - 5e-12 At4g17560 ribosomal protein L19 family protein O.I. H.G. S.X.
0.73 88.9 Gma.7148.1.A1_at At3g56910 - - 9e-17 At5g57170 macrophage migration inhibitory factor family protein / MIF family protein O.I. H.G. S.X.
0.72 88.1 Gma.16479.2.S1_at At3g56910 - - 1e-2 At5g27390 - O.I. H.G. S.X.
0.72 88.1 Gma.7012.1.S1_a_at At3g56910 - - 7e-3 At3g29070 protein transmembrane transporter O.I. H.G. S.X.
0.71 87.8 Gma.2305.1.S1_at At3g56910 - - 2e-19 At2g33800 ribosomal protein S5 family protein O.I. H.G. S.X.
0.70 87.1 Gma.13099.1.S1_at At3g56910 - - 8e-12 At1g05190 emb2394 (embryo defective 2394) O.I. H.G. S.X.
0.70 87.1 GmaAffx.74019.1.S1_s_at At3g56910 - - 3e+0 At5g49710 unknown protein O.I. H.G. S.X.
0.68 86.4 Gma.10122.1.A1_at At3g56910 - - 3e-8 At5g14320 30S ribosomal protein S13, chloroplast (CS13) O.I. H.G. S.X.
0.67 86.1 Gma.4606.1.S1_at At3g56910 - - 9e-12 At5g13510 ribosomal protein L10 family protein O.I. H.G. S.X.
0.65 83.8 GmaAffx.91630.1.S1_s_at At3g56910 - - 4e-1 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.
0.65 83.8 Gma.15874.1.S1_at At3g56910 - - 3e-18 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.62 82.1 Gma.3588.1.S1_at At3g56910 - - 2e-52 At3g13120 30S ribosomal protein S10, chloroplast, putative O.I. H.G. S.X.
0.61 81.8 Gma.667.1.S1_at At3g56910 - - 1e-7 At4g09040 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.60 80.7 Gma.16054.1.S1_at At3g56910 - - 7e-6 At4g16410 unknown protein O.I. H.G. S.X.
0.59 79.5 Gma.1963.1.S1_s_at At3g56910 - - 8e-23 At1g50900 - O.I. H.G. S.X.
0.59 79.5 Gma.7972.1.S1_at At3g56910 - - 2e+0 At4g24310 unknown protein O.I. H.G. S.X.
0.59 79.5 Gma.5413.3.S1_a_at At3g56910 - - 1e-9 At2g24090 ribosomal protein L35 family protein O.I. H.G. S.X.
0.58 78.8 GmaAffx.64090.1.S1_at At3g56910 - - 2e-20 At4g29060 emb2726 (embryo defective 2726) O.I. H.G. S.X.
0.57 78.8 GmaAffx.85304.1.S1_at At3g56910 - - 5e+0 At5g38290 peptidyl-tRNA hydrolase family protein O.I. H.G. S.X.
0.57 78.8 Gma.1355.1.S1_at At3g56910 - - 1e-4 At3g54210 ribosomal protein L17 family protein O.I. H.G. S.X.
0.54 74.8 Gma.5851.3.S1_at At3g56910 - - 1e-11 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) O.I. H.G. S.X.
0.54 74.8 Gma.1389.1.S1_at At3g56910 - - 4e-48 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.53 74.2 Gma.17460.1.S1_s_at At3g56910 - - 1e-3 At5g65220 ribosomal protein L29 family protein O.I. H.G. S.X.
0.50 71.7 Gma.11178.1.S1_at At3g56910 - - 1e-7 At1g29070 ribosomal protein L34 family protein O.I. H.G. S.X.
0.49 68.3 Gma.10730.1.S1_at At3g56910 - - 1e-16 At1g68590 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative O.I. H.G. S.X.
0.49 68.3 Gma.10078.1.S1_at At3g56910 - - 3e+0 At4g26520 fructose-bisphosphate aldolase, cytoplasmic O.I. H.G. S.X.
0.48 67.7 Gma.7100.1.A1_at At3g56910 - - 1e-6 At4g14890 ferredoxin family protein O.I. H.G. S.X.
0.47 66.6 Gma.5702.1.S1_a_at At3g56910 - - 1e-11 At4g24770 RBP31 (31-KDA RNA BINDING PROTEIN) O.I. H.G. S.X.
0.45 63.9 Gma.705.1.S1_a_at At3g56910 - - 5e-3 At4g34290 SWIB complex BAF60b domain-containing protein O.I. H.G. S.X.
0.41 58.1 Gma.7729.1.S1_at At3g56910 - - 2e+0 At2g03040 transmembrane protein-related O.I. H.G. S.X.
0.37 51.7 Gma.12235.1.S1_at At3g56910 - - 2e-18 At3g55330 PPL1 (PsbP-like protein 1) O.I. H.G. S.X.
0.37 51.7 Gma.12909.1.A1_at At3g56910 - - 9e-21 At5g17670 hydrolase, acting on ester bonds O.I. H.G. S.X.
0.28 39.0 Gma.5539.1.S1_a_at At3g56910 - - 9e-6 At4g02530 chloroplast thylakoid lumen protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.6	Gma.15777.1.A1_at	At3g56910	-	-	1e-9	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.
0.77	90.3	Gma.8261.1.A1_s_at	At3g56910	-	-	1e-1	At5g14910	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.76	89.7	Gma.7200.1.S1_at	At3g56910	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.
0.74	89.2	Gma.10595.1.S1_at	At3g56910	-	-	2e-40	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.
0.74	89.2	Gma.13001.2.S1_a_at	At3g56910	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.
0.73	88.9	Gma.7148.1.A1_at	At3g56910	-	-	9e-17	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.
0.72	88.1	Gma.16479.2.S1_at	At3g56910	-	-	1e-2	At5g27390	-	O.I.	H.G.	S.X.
0.72	88.1	Gma.7012.1.S1_a_at	At3g56910	-	-	7e-3	At3g29070	protein transmembrane transporter	O.I.	H.G.	S.X.
0.71	87.8	Gma.2305.1.S1_at	At3g56910	-	-	2e-19	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.
0.70	87.1	Gma.13099.1.S1_at	At3g56910	-	-	8e-12	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.
0.70	87.1	GmaAffx.74019.1.S1_s_at	At3g56910	-	-	3e+0	At5g49710	unknown protein	O.I.	H.G.	S.X.
0.68	86.4	Gma.10122.1.A1_at	At3g56910	-	-	3e-8	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.
0.67	86.1	Gma.4606.1.S1_at	At3g56910	-	-	9e-12	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.
0.65	83.8	GmaAffx.91630.1.S1_s_at	At3g56910	-	-	4e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.
0.65	83.8	Gma.15874.1.S1_at	At3g56910	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.
0.62	82.1	Gma.3588.1.S1_at	At3g56910	-	-	2e-52	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.
0.61	81.8	Gma.667.1.S1_at	At3g56910	-	-	1e-7	At4g09040	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.60	80.7	Gma.16054.1.S1_at	At3g56910	-	-	7e-6	At4g16410	unknown protein	O.I.	H.G.	S.X.
0.59	79.5	Gma.1963.1.S1_s_at	At3g56910	-	-	8e-23	At1g50900	-	O.I.	H.G.	S.X.
0.59	79.5	Gma.7972.1.S1_at	At3g56910	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.
0.59	79.5	Gma.5413.3.S1_a_at	At3g56910	-	-	1e-9	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.
0.58	78.8	GmaAffx.64090.1.S1_at	At3g56910	-	-	2e-20	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.
0.57	78.8	GmaAffx.85304.1.S1_at	At3g56910	-	-	5e+0	At5g38290	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.
0.57	78.8	Gma.1355.1.S1_at	At3g56910	-	-	1e-4	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.
0.54	74.8	Gma.5851.3.S1_at	At3g56910	-	-	1e-11	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.
0.54	74.8	Gma.1389.1.S1_at	At3g56910	-	-	4e-48	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.
0.53	74.2	Gma.17460.1.S1_s_at	At3g56910	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.
0.50	71.7	Gma.11178.1.S1_at	At3g56910	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.
0.49	68.3	Gma.10730.1.S1_at	At3g56910	-	-	1e-16	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.
0.49	68.3	Gma.10078.1.S1_at	At3g56910	-	-	3e+0	At4g26520	fructose-bisphosphate aldolase, cytoplasmic	O.I.	H.G.	S.X.
0.48	67.7	Gma.7100.1.A1_at	At3g56910	-	-	1e-6	At4g14890	ferredoxin family protein	O.I.	H.G.	S.X.
0.47	66.6	Gma.5702.1.S1_a_at	At3g56910	-	-	1e-11	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.
0.45	63.9	Gma.705.1.S1_a_at	At3g56910	-	-	5e-3	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.41	58.1	Gma.7729.1.S1_at	At3g56910	-	-	2e+0	At2g03040	transmembrane protein-related	O.I.	H.G.	S.X.
0.37	51.7	Gma.12235.1.S1_at	At3g56910	-	-	2e-18	At3g55330	PPL1 (PsbP-like protein 1)	O.I.	H.G.	S.X.
0.37	51.7	Gma.12909.1.A1_at	At3g56910	-	-	9e-21	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.
0.28	39.0	Gma.5539.1.S1_a_at	At3g56910	-	-	9e-6	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os01g0278900
Gene name
Homology with Arabidopsis	Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-7)
Module size	6 genes
NF	0.79
%ile	98.0

Co-expression analysis

Gene ID Os01g0278900 Gene name Homology with ArabidopsisSimilar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-7) Module size 6 genes NF 0.79 %ile 98.0

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0278900

Gene name
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-7)

Module size 6 genes

NF 0.79

%ile 98.0

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays