CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0266500

Gene name
Homology with Arabidopsis Similar to At5g55570: unknown protein (HF=9e+0)

Module size 6 genes

NF 0.03

%ile 2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.84 Os01g0266500 AK101084.1 - Phenazine biosynthesis PhzC/PhzF protein familyprotein 9e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.50 68.0 0.82 Os01g0369700 AF309382.1 - Glutathione S-transferase GST 8 (EC 2.5.1.18) 2e+0 At5g53250 AGP22 (ARABINOGALACTAN PROTEIN 22) O.I. H.G. S.X.
0.50 68.0 0.87 Os01g0627400 AK074025.1 - Cytochrome P450 monooxygenase CYP72A5 (Fragment) 4e+0 At3g14630 CYP72A9 O.I. H.G. S.X.
0.50 68.0 0.88 Os01g0697100 AK071819.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 1e-2 At4g15260 UDP-glucoronosyl/UDP-glucosyl transferase family protein O.I. H.G. S.X.
0.40 51.1 0.81 Os03g0154000 AK103088.1 - Aromatic-ring hydroxylase family protein 3e+0 At3g13882 structural constituent of ribosome O.I. H.G. S.X.
0.01 0.5 0.79 Os08g0109200 AK101912.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 6e-11 At5g63620 oxidoreductase, zinc-binding dehydrogenase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.4 99.0 GSM174889 H FR13 4 dpi rep 2 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
15.4 98.7 GSM174886 F FR13 4 dpi rep 1 with array type rice from Affymetrix GSE7256 Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
13.7 98.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM154833 Root_tZ-treatment_30min_replicate 1 GSE6719 Cytokinin responsive genes in rice
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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