CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0264400

Gene name
Homology with Arabidopsis Similar to At3g10040: transcription factor (HF=2e-4)

Module size 9 genes

NF 0.58

%ile 78.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.85 Os01g0264400 NM_187993.1 - Conserved hypothetical protein 2e-4 At3g10040 transcription factor O.I. H.G. S.X.
0.71 89.6 0.91 Os06g0149700 AF073698.1 - Cysteine synthase (EC 4.2.99.8) 6e-1 At5g28030 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative O.I. H.G. S.X.
0.71 89.6 0.88 Os10g0552800 AK062381.1 - RCc3 protein 9e-2 At2g25820 transcription factor O.I. H.G. S.X.
0.67 87.2 0.91 Os02g0256200 AB110701.1 - Conserved hypothetical protein 1e-1 At5g67060 HEC1 (HECATE 1) O.I. H.G. S.X.
0.59 78.0 0.92 Os08g0159700 AK109080.1 - Protein of unknown function DUF296 domaincontaining protein 6e-1 At2g41225 unknown protein O.I. H.G. S.X.
0.59 78.0 0.93 Os02g0662000 AK109149.1 - RCc3 protein 1e-1 At2g25820 transcription factor O.I. H.G. S.X.
0.55 73.7 0.89 Os10g0454200 AU164553 - Hypothetical protein 3e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.44 58.1 0.88 Os03g0563600 AK122030.1 - Peroxidase 56 precursor (EC 1.11.1.7) (AtperoxP56) (ATP33) 2e-1 At5g15180 peroxidase, putative O.I. H.G. S.X.
0.39 48.3 0.91 Os02g0653200 AK062889.1 - Cupredoxin domain containing protein 7e-3 At1g72230 plastocyanin-like domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.5 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0006535 The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine.
0.098 2 GO:0006869 The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
0.037 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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