CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0260300

Gene name
Homology with Arabidopsis Similar to At5g05230: ubiquitin-protein ligase (HF=1e-1)

Module size 7 genes

NF 0.49

%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.98 Os01g0260300 9629.m01542 - - 1e-1 At5g05230 ubiquitin-protein ligase O.I. H.G. S.X.
0.73 91.1 0.98 Os11g0308700 9639.m01908 - - 6e-1 At4g33350 chloroplast inner membrane import protein Tic22, putative O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0791100 9631.m05665 - - 3e+0 At5g48860 unknown protein O.I. H.G. S.X.
0.40 51.1 0.99 Os05g0255200 9633.m01478 - - 7e+0 At4g09260 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os04g0348200 9632.m02648 - - 2e+0 At5g35300 unknown protein O.I. H.G. S.X.
0.34 40.0 0.98 Os10g0106750 NM_194527.1 - - 1e+1 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) O.I. H.G. S.X.
0.32 36.3 0.98 Os03g0298200 9631.m01842 - - 3e+0 At1g32570 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
54.7 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
50.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
30.0 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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