CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0255500

Gene name
Homology with Arabidopsis Similar to At5g56880: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.63

%ile 85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.99 Os01g0255500 NM_187903.1 - - 1e+0 At5g56880 unknown protein O.I. H.G. S.X.
0.80 94.6 1.00 Os01g0873400 9629.m06474 - - 3e-1 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) O.I. H.G. S.X.
0.67 87.2 1.00 Os04g0591700 9632.m04881 - - 7e+0 At5g59845 gibberellin-regulated family protein O.I. H.G. S.X.
0.55 73.7 0.99 Os09g0241300 9637.m00412 - - 5e-1 At1g34520 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.
0.44 58.1 1.00 Os10g0434600 9638.m02552 - - 2e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.31 34.5 1.00 Os10g0173200 NM_195093.1 - - 4e+0 At5g40370 glutaredoxin, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.3 99.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.6 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.1 99.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.7 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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