CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0247500

Gene name
Homology with Arabidopsis Similar to At1g49730: protein kinase family protein (HF=8e-4)

Module size 28 genes

NF 0.18

%ile 15.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.1 0.86 Os01g0247500 AK065614.1 - Protein kinase domain containing protein 8e-4 At1g49730 protein kinase family protein O.I. H.G. S.X.
0.40 51.1 0.90 Os04g0669600 AK110767.1 - Phospholipase/Carboxylesterase family protein 2e+0 At4g22300 SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) O.I. H.G. S.X.
0.34 40.0 0.90 Os01g0733000 AK109720.1 - Hypothetical protein 2e+0 At4g29110 unknown protein O.I. H.G. S.X.
0.24 22.4 0.93 Os01g0379400 AK110939.1 - F-box protein 3e-1 At5g48270 unknown protein O.I. H.G. S.X.
0.23 21.2 0.93 Os09g0425700 AK066836.1 - N-myristoyltransferase-like protein 2 1e+0 At4g00180 YAB3 (YABBY3) O.I. H.G. S.X.
0.23 21.2 0.94 Os02g0161000 AK111660.1 - Serine/threonine protein kinase-like protein 2e-17 At5g07070 CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) O.I. H.G. S.X.
0.22 19.4 0.93 Os02g0582100 CB657553 - Conserved hypothetical protein 4e-1 At5g52360 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) O.I. H.G. S.X.
0.22 19.4 0.94 Os05g0208900 AK111244.1 - Conserved hypothetical protein 4e-1 At5g45680 FK506-binding protein 1 (FKBP13) O.I. H.G. S.X.
0.21 17.9 0.95 Os01g0681400 AK101033.1 - Autophagy protein Apg6 family protein 5e-6 At3g61710 autophagy protein Apg6 family O.I. H.G. S.X.
0.21 17.9 0.92 Os06g0686400 AK063215.1 - Plant lipid transfer protein/Par allergen familyprotein 9e-1 At4g27810 unknown protein O.I. H.G. S.X.
0.21 17.9 0.95 Os04g0563100 9632.m04591 - Protein of unknown function family protein 4e-5 At4g38360 unknown protein O.I. H.G. S.X.
0.20 16.5 0.94 Os09g0502800 9637.m02859 - Cyclin-like F-box domain containing protein 2e-1 At5g23440 FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1) O.I. H.G. S.X.
0.19 15.1 0.91 Os05g0358700 9633.m02663 - Phospholipase D/Transphosphatidylase domaincontaining protein 2e-12 At3g16785 PLDP1 (PHOSPHOLIPASE D P1) O.I. H.G. S.X.
0.19 15.1 0.94 Os04g0454600 AK066187.1 - Conserved hypothetical protein 4e-1 At5g19680 leucine-rich repeat family protein O.I. H.G. S.X.
0.18 13.7 0.90 Os06g0636600 AK119586.1 - Protein kinase domain containing protein 5e-18 At1g62400 HT1 (high leaf temperature 1) O.I. H.G. S.X.
0.18 13.7 0.91 Os05g0544900 AK109267.1 - Hypothetical protein 5e-1 At4g23770 unknown protein O.I. H.G. S.X.
0.18 13.7 0.95 Os02g0293800 AK103308.1 - Conserved hypothetical protein 1e-6 At3g61800 - O.I. H.G. S.X.
0.16 11.3 0.96 Os10g0541800 AK111392.1 - Hypothetical protein 2e+0 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.15 10.3 0.94 Os08g0171000 AK071278.1 - Conserved hypothetical protein 3e+0 At3g42830 ring-box protein Roc1/Rbx1/Hrt1, putative O.I. H.G. S.X.
0.14 9.3 0.95 Os03g0636600 AK069223.1 - - 3e+0 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.
0.14 9.3 0.93 Os04g0414300 AK058617.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 7e-1 At2g33180 unknown protein O.I. H.G. S.X.
0.13 8.2 0.90 Os01g0651500 9629.m04428 - Hypothetical protein 8e+0 Atmg01090 - O.I. H.G. S.X.
0.11 6.5 0.95 Os10g0142500 AK072788.1 - - 2e-1 At4g16265 NRPB9B O.I. H.G. S.X.
0.11 6.5 0.95 Os02g0464500 9630.m02503 - Conserved hypothetical protein 3e-1 At3g29020 MYB110 (myb domain protein 110) O.I. H.G. S.X.
0.10 5.7 0.95 Os02g0566700 AK102754.1 - - 2e+0 At5g66170 - O.I. H.G. S.X.
0.08 4.2 0.90 Os05g0501400 AK110116.1 - Receptor-like protein kinase 5 6e-6 At4g03230 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.08 4.2 0.91 Os01g0114600 NM_184093.1 - Receptor-like kinase ARK1AS (Fragment) 4e-3 At4g18610 LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9) O.I. H.G. S.X.
0.07 3.7 0.93 Os01g0736400 AK069723.1 - Aminotransferase, class I and II domain containingprotein 7e-6 At5g04620 ATBIOF (BIOTIN F) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.1	0.86	Os01g0247500	AK065614.1	-	Protein kinase domain containing protein	8e-4	At1g49730	protein kinase family protein	O.I.	H.G.	S.X.
0.40	51.1	0.90	Os04g0669600	AK110767.1	-	Phospholipase/Carboxylesterase family protein	2e+0	At4g22300	SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1)	O.I.	H.G.	S.X.
0.34	40.0	0.90	Os01g0733000	AK109720.1	-	Hypothetical protein	2e+0	At4g29110	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.93	Os01g0379400	AK110939.1	-	F-box protein	3e-1	At5g48270	unknown protein	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os09g0425700	AK066836.1	-	N-myristoyltransferase-like protein 2	1e+0	At4g00180	YAB3 (YABBY3)	O.I.	H.G.	S.X.
0.23	21.2	0.94	Os02g0161000	AK111660.1	-	Serine/threonine protein kinase-like protein	2e-17	At5g07070	CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)	O.I.	H.G.	S.X.
0.22	19.4	0.93	Os02g0582100	CB657553	-	Conserved hypothetical protein	4e-1	At5g52360	ADF10 (ACTIN DEPOLYMERIZING FACTOR 10)	O.I.	H.G.	S.X.
0.22	19.4	0.94	Os05g0208900	AK111244.1	-	Conserved hypothetical protein	4e-1	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os01g0681400	AK101033.1	-	Autophagy protein Apg6 family protein	5e-6	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.
0.21	17.9	0.92	Os06g0686400	AK063215.1	-	Plant lipid transfer protein/Par allergen familyprotein	9e-1	At4g27810	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os04g0563100	9632.m04591	-	Protein of unknown function family protein	4e-5	At4g38360	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.94	Os09g0502800	9637.m02859	-	Cyclin-like F-box domain containing protein	2e-1	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.
0.19	15.1	0.91	Os05g0358700	9633.m02663	-	Phospholipase D/Transphosphatidylase domaincontaining protein	2e-12	At3g16785	PLDP1 (PHOSPHOLIPASE D P1)	O.I.	H.G.	S.X.
0.19	15.1	0.94	Os04g0454600	AK066187.1	-	Conserved hypothetical protein	4e-1	At5g19680	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.18	13.7	0.90	Os06g0636600	AK119586.1	-	Protein kinase domain containing protein	5e-18	At1g62400	HT1 (high leaf temperature 1)	O.I.	H.G.	S.X.
0.18	13.7	0.91	Os05g0544900	AK109267.1	-	Hypothetical protein	5e-1	At4g23770	unknown protein	O.I.	H.G.	S.X.
0.18	13.7	0.95	Os02g0293800	AK103308.1	-	Conserved hypothetical protein	1e-6	At3g61800	-	O.I.	H.G.	S.X.
0.16	11.3	0.96	Os10g0541800	AK111392.1	-	Hypothetical protein	2e+0	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	O.I.	H.G.	S.X.
0.15	10.3	0.94	Os08g0171000	AK071278.1	-	Conserved hypothetical protein	3e+0	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	O.I.	H.G.	S.X.
0.14	9.3	0.95	Os03g0636600	AK069223.1	-	-	3e+0	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.
0.14	9.3	0.93	Os04g0414300	AK058617.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	7e-1	At2g33180	unknown protein	O.I.	H.G.	S.X.
0.13	8.2	0.90	Os01g0651500	9629.m04428	-	Hypothetical protein	8e+0	Atmg01090	-	O.I.	H.G.	S.X.
0.11	6.5	0.95	Os10g0142500	AK072788.1	-	-	2e-1	At4g16265	NRPB9B	O.I.	H.G.	S.X.
0.11	6.5	0.95	Os02g0464500	9630.m02503	-	Conserved hypothetical protein	3e-1	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.
0.10	5.7	0.95	Os02g0566700	AK102754.1	-	-	2e+0	At5g66170	-	O.I.	H.G.	S.X.
0.08	4.2	0.90	Os05g0501400	AK110116.1	-	Receptor-like protein kinase 5	6e-6	At4g03230	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.
0.08	4.2	0.91	Os01g0114600	NM_184093.1	-	Receptor-like kinase ARK1AS (Fragment)	4e-3	At4g18610	LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)	O.I.	H.G.	S.X.
0.07	3.7	0.93	Os01g0736400	AK069723.1	-	Aminotransferase, class I and II domain containingprotein	7e-6	At5g04620	ATBIOF (BIOTIN F)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.4 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
25.4	99.5	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.4	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3	98.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.0	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6	98.7	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2	98.7	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3	98.6	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9	98.5	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.040 1 GO:0007186 The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.022 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
0.013 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

SF	Genes	GO ID	Process Name
0.040	1	GO:0007186	The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.
0.022	1	GO:0007165	The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
0.013	1	GO:0009058	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os01g0247500
Gene name
Homology with Arabidopsis	Similar to At1g49730: protein kinase family protein (HF=8e-4)
Module size	28 genes
NF	0.18
%ile	15.9

Co-expression analysis

Gene ID Os01g0247500 Gene name Homology with ArabidopsisSimilar to At1g49730: protein kinase family protein (HF=8e-4) Module size 28 genes NF 0.18 %ile 15.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os01g0247500

Gene name
Homology with Arabidopsis Similar to At1g49730: protein kinase family protein (HF=8e-4)

Module size 28 genes

NF 0.18

%ile 15.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays