CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0238300

Gene name
Homology with Arabidopsis Similar to At5g45280: pectinacetylesterase, putative (HF=2e-1)

Module size 6 genes

NF 0.64

%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os01g0238300 NM_188690.1 - - 2e-1 At5g45280 pectinacetylesterase, putative O.I. H.G. S.X.
0.67 87.2 0.97 Os01g0230800 NM_188614.1 - Hypothetical protein 2e+0 At2g19070 SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) O.I. H.G. S.X.
0.55 73.7 0.98 Os05g0411000 9633.m03145 - - 5e+0 At4g30097 unknown protein O.I. H.G. S.X.
0.55 73.7 0.98 Os12g0147650 9640.m00443 - - 5e+0 At4g27740 - O.I. H.G. S.X.
0.50 68.0 0.98 Os06g0330400 9634.m02205 - Sterol desaturase family protein 1e-1 At1g14290 SBH2 (SPHINGOID BASE HYDROXYLASE 2) O.I. H.G. S.X.
0.33 38.8 0.98 Os10g0343950 9638.m01678 - - 6e+0 At3g16660 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.5 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.3 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage