CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os01g0236300

Gene name
Homology with Arabidopsis Similar to At4g23980: ARF9 (AUXIN RESPONSE FACTOR 9) (HF=2e-2)

Module size 7 genes

NF 0.34

%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.89 Os01g0236300 AK102521.1 - Auxin response factor 18 2e-2 At4g23980 ARF9 (AUXIN RESPONSE FACTOR 9) O.I. H.G. S.X.
0.53 71.3 0.90 Os11g0140400 9640.m00336 - Calcium-translocating P-type ATPase, PMCA-typefamily protein 2e-24 At3g57330 ACA11 (autoinhibited Ca2+-ATPase 11) O.I. H.G. S.X.
0.50 68.0 0.89 Os06g0717200 AK111824.1 - Leucine-rich repeat/receptor protein kinaseprecursor 7e-12 At3g49670 BAM2 (BARELY ANY MERISTEM 2) O.I. H.G. S.X.
0.44 58.1 0.90 Os06g0222400 AK063886.1 - Hypothetical protein 2e-3 At5g46780 VQ motif-containing protein O.I. H.G. S.X.
0.24 22.4 0.90 Os05g0120700 AK062874.1 - Cation transporting ATPase, C-terminal domaincontaining protein 2e-23 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) O.I. H.G. S.X.
0.24 22.4 0.90 Os05g0228400 AK121917.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 8e-8 At2g20100 ethylene-responsive family protein O.I. H.G. S.X.
0.18 13.7 0.90 Os01g0897600 CA762923 - Glycoside hydrolase, family 1 protein 2e-7 At5g36890 BGLU42 (BETA GLUCOSIDASE 42) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.0 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0010080 Any process involved in maintaining the size and shape of a floral meristem.
0.250 1 GO:0048833 Any process that modulates the number of floral organs formed in a floral whorl.
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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